Strain Fitness in Shewanella loihica PV-4 around Shew_2843

Experiment: Motility M3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2842 and Shew_2843 are separated by 276 nucleotidesShew_2843 and Shew_2844 are separated by 148 nucleotides Shew_2842: Shew_2842 - peptidase M48, Ste24p (RefSeq), at 3,369,057 to 3,369,845 _2842 Shew_2843: Shew_2843 - chaperone protein DnaJ (RefSeq), at 3,370,122 to 3,371,252 _2843 Shew_2844: Shew_2844 - chaperone protein DnaK (RefSeq), at 3,371,401 to 3,373,314 _2844 Position (kb) 3370 3371 3372Strain fitness (log2 ratio) -3 -2 -1 0 1at 3369.218 kb on + strand, within Shew_2842at 3369.423 kb on - strand, within Shew_2842at 3369.461 kb on + strand, within Shew_2842at 3369.481 kb on - strand, within Shew_2842at 3369.921 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M3
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3,369,218 + Shew_2842 0.20 +0.7
3,369,423 - Shew_2842 0.46 -0.2
3,369,461 + Shew_2842 0.51 +1.2
3,369,481 - Shew_2842 0.54 -3.4
3,369,921 - +1.2

Or see this region's nucleotide sequence