Strain Fitness in Shewanella loihica PV-4 around Shew_2261

Experiment: Motility M3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2259 and Shew_2260 are separated by 386 nucleotidesShew_2260 and Shew_2261 overlap by 1 nucleotidesShew_2261 and Shew_2262 are separated by 23 nucleotidesShew_2262 and Shew_2263 are separated by 75 nucleotides Shew_2259: Shew_2259 - metal dependent phosphohydrolase (RefSeq), at 2,638,573 to 2,639,775 _2259 Shew_2260: Shew_2260 - intracellular septation protein A (RefSeq), at 2,640,162 to 2,640,707 _2260 Shew_2261: Shew_2261 - YciI-like protein (RefSeq), at 2,640,707 to 2,641,006 _2261 Shew_2262: Shew_2262 - exonuclease III (RefSeq), at 2,641,030 to 2,641,839 _2262 Shew_2263: Shew_2263 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,641,915 to 2,643,363 _2263 Position (kb) 2640 2641 2642Strain fitness (log2 ratio) -3 -2 -1 0 1at 2640.032 kb on - strandat 2640.671 kb on + strandat 2640.793 kb on + strand, within Shew_2261at 2640.922 kb on + strand, within Shew_2261at 2640.946 kb on - strand, within Shew_2261at 2641.785 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M3
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2,640,032 - +0.0
2,640,671 + -0.0
2,640,793 + Shew_2261 0.29 -0.7
2,640,922 + Shew_2261 0.72 -3.1
2,640,946 - Shew_2261 0.80 -1.1
2,641,785 - -0.5

Or see this region's nucleotide sequence