Strain Fitness in Shewanella loihica PV-4 around Shew_2152

Experiment: Motility M3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2150 and Shew_2151 are separated by 116 nucleotidesShew_2151 and Shew_2152 are separated by 354 nucleotidesShew_2152 and Shew_2153 are separated by 105 nucleotides Shew_2150: Shew_2150 - integral membrane protein TerC (RefSeq), at 2,496,066 to 2,496,293 _2150 Shew_2151: Shew_2151 - hypothetical protein (RefSeq), at 2,496,410 to 2,496,787 _2151 Shew_2152: Shew_2152 - hypothetical protein (RefSeq), at 2,497,142 to 2,497,486 _2152 Shew_2153: Shew_2153 - LysR family transcriptional regulator (RefSeq), at 2,497,592 to 2,498,497 _2153 Position (kb) 2497 2498Strain fitness (log2 ratio) -1 0 1at 2496.151 kb on + strand, within Shew_2150at 2496.197 kb on - strand, within Shew_2150at 2496.267 kb on - strand, within Shew_2150at 2496.440 kb on + strandat 2496.440 kb on + strandat 2496.495 kb on - strand, within Shew_2151at 2497.673 kb on - strandat 2497.973 kb on - strand, within Shew_2153

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M3
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2,496,151 + Shew_2150 0.37 -1.6
2,496,197 - Shew_2150 0.57 -0.1
2,496,267 - Shew_2150 0.88 -0.3
2,496,440 + +1.3
2,496,440 + +0.4
2,496,495 - Shew_2151 0.22 +0.8
2,497,673 - +1.7
2,497,973 - Shew_2153 0.42 +1.2

Or see this region's nucleotide sequence