Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2142 and Shew_2143 are separated by 57 nucleotides Shew_2143 and Shew_2144 are separated by 54 nucleotides Shew_2144 and Shew_2145 are separated by 108 nucleotides
Shew_2142: Shew_2142 - hypothetical protein (RefSeq), at 2,488,761 to 2,489,135
_2142
Shew_2143: Shew_2143 - hypothetical protein (RefSeq), at 2,489,193 to 2,489,876
_2143
Shew_2144: Shew_2144 - response regulator receiver modulated CheW protein (RefSeq), at 2,489,931 to 2,490,884
_2144
Shew_2145: Shew_2145 - MscS mechanosensitive ion channel (RefSeq), at 2,490,993 to 2,492,606
_2145
Position (kb)
2489
2490
2491 Strain fitness (log2 ratio)
-1
0
1
2 at 2489.364 kb on + strand, within Shew_2143 at 2489.511 kb on - strand, within Shew_2143 at 2489.659 kb on - strand, within Shew_2143 at 2490.124 kb on - strand, within Shew_2144 at 2490.182 kb on - strand, within Shew_2144 at 2490.875 kb on - strand at 2491.147 kb on - strand at 2491.207 kb on - strand, within Shew_2145 at 2491.219 kb on + strand, within Shew_2145 at 2491.227 kb on - strand, within Shew_2145 at 2491.522 kb on - strand, within Shew_2145 at 2491.663 kb on - strand, within Shew_2145 at 2491.827 kb on + strand, within Shew_2145
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 2,489,364 + Shew_2143 0.25 -1.5 2,489,511 - Shew_2143 0.46 -0.1 2,489,659 - Shew_2143 0.68 +0.5 2,490,124 - Shew_2144 0.20 -1.0 2,490,182 - Shew_2144 0.26 +0.8 2,490,875 - -0.1 2,491,147 - +0.4 2,491,207 - Shew_2145 0.13 -0.6 2,491,219 + Shew_2145 0.14 -0.1 2,491,227 - Shew_2145 0.14 -0.6 2,491,522 - Shew_2145 0.33 +2.2 2,491,663 - Shew_2145 0.42 +1.0 2,491,827 + Shew_2145 0.52 +0.1
Or see this region's nucleotide sequence