Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1705 and Shew_1706 are separated by 92 nucleotides Shew_1706 and Shew_1707 are separated by 335 nucleotides Shew_1707 and Shew_1708 are separated by 113 nucleotides Shew_1708 and Shew_1709 are separated by 130 nucleotides
Shew_1705: Shew_1705 - hypothetical protein (RefSeq), at 1,959,298 to 1,959,663
_1705
Shew_1706: Shew_1706 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 1,959,756 to 1,960,148
_1706
Shew_1707: Shew_1707 - hypothetical protein (RefSeq), at 1,960,484 to 1,961,410
_1707
Shew_1708: Shew_1708 - hypothetical protein (RefSeq), at 1,961,524 to 1,962,102
_1708
Shew_1709: Shew_1709 - hypothetical protein (RefSeq), at 1,962,233 to 1,962,598
_1709
Position (kb) 1960
1961
1962 Strain fitness (log2 ratio) -2
-1
0
1 at 1959.560 kb on + strand, within Shew_1705 at 1960.036 kb on + strand, within Shew_1706 at 1960.183 kb on + strand at 1960.517 kb on + strand at 1960.749 kb on + strand, within Shew_1707 at 1960.799 kb on + strand, within Shew_1707 at 1961.542 kb on - strand at 1961.559 kb on - strand at 1961.879 kb on + strand, within Shew_1708 at 1962.096 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 1,959,560 + Shew_1705 0.72 -1.9 1,960,036 + Shew_1706 0.71 -0.7 1,960,183 + +0.2 1,960,517 + -0.3 1,960,749 + Shew_1707 0.29 -1.9 1,960,799 + Shew_1707 0.34 -0.5 1,961,542 - +1.3 1,961,559 - -0.2 1,961,879 + Shew_1708 0.61 -2.3 1,962,096 + +1.0
Or see this region's nucleotide sequence