Strain Fitness in Shewanella loihica PV-4 around Shew_1623

Experiment: Motility M3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1621 and Shew_1622 are separated by 27 nucleotidesShew_1622 and Shew_1623 are separated by 65 nucleotidesShew_1623 and cysB are separated by 238 nucleotides Shew_1621: Shew_1621 - agmatinase (RefSeq), at 1,853,975 to 1,854,898 _1621 Shew_1622: Shew_1622 - pyridoxamine 5'-phosphate oxidase (RefSeq), at 1,854,926 to 1,855,582 _1622 Shew_1623: Shew_1623 - hypothetical protein (RefSeq), at 1,855,648 to 1,856,424 _1623 Shew_1624: cysB - transcriptional regulator CysB (RefSeq), at 1,856,663 to 1,857,637 cysB Position (kb) 1855 1856 1857Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1855.812 kb on + strand, within Shew_1623at 1856.015 kb on - strand, within Shew_1623at 1856.221 kb on - strand, within Shew_1623

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M3
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1,855,812 + Shew_1623 0.21 -3.8
1,856,015 - Shew_1623 0.47 -1.9
1,856,221 - Shew_1623 0.74 -3.3

Or see this region's nucleotide sequence