Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1461 and Shew_1462 are separated by 68 nucleotides Shew_1462 and Shew_1463 are separated by 127 nucleotides Shew_1463 and nadE are separated by 175 nucleotides
Shew_1461: Shew_1461 - zinc carboxypeptidase-related protein (RefSeq), at 1,683,421 to 1,684,398
_1461
Shew_1462: Shew_1462 - lysine exporter protein LysE/YggA (RefSeq), at 1,684,467 to 1,685,117
_1462
Shew_1463: Shew_1463 - AraC family transcriptional regulator (RefSeq), at 1,685,245 to 1,686,084
_1463
Shew_1464: nadE - NAD synthetase (RefSeq), at 1,686,260 to 1,687,126
nadE
Position (kb)
1685
1686
1687 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1684.350 kb on + strand at 1684.689 kb on + strand, within Shew_1462 at 1684.725 kb on + strand, within Shew_1462 at 1684.755 kb on + strand, within Shew_1462 at 1684.763 kb on - strand, within Shew_1462 at 1684.934 kb on - strand, within Shew_1462 at 1685.053 kb on + strand at 1685.330 kb on - strand, within Shew_1463 at 1685.674 kb on - strand, within Shew_1463 at 1685.721 kb on + strand, within Shew_1463 at 1685.721 kb on + strand, within Shew_1463 at 1685.729 kb on - strand, within Shew_1463 at 1686.142 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 1,684,350 + +0.9 1,684,689 + Shew_1462 0.34 +0.5 1,684,725 + Shew_1462 0.40 +1.1 1,684,755 + Shew_1462 0.44 +0.0 1,684,763 - Shew_1462 0.45 +1.1 1,684,934 - Shew_1462 0.72 -0.2 1,685,053 + +1.1 1,685,330 - Shew_1463 0.10 -1.6 1,685,674 - Shew_1463 0.51 +0.7 1,685,721 + Shew_1463 0.57 +3.7 1,685,721 + Shew_1463 0.57 +1.0 1,685,729 - Shew_1463 0.58 -0.3 1,686,142 - +0.9
Or see this region's nucleotide sequence