Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1444 and Shew_1445 overlap by 1 nucleotides Shew_1445 and Shew_1446 are separated by 87 nucleotides
Shew_1444: Shew_1444 - dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) , at 1,660,596 to 1,661,993
_1444
Shew_1445: Shew_1445 - dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data) , at 1,661,993 to 1,662,631
_1445
Shew_1446: Shew_1446 - dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component (from data) , at 1,662,719 to 1,663,729
_1446
Position (kb)
1661
1662
1663 Strain fitness (log2 ratio)
-1
0
1 at 1661.729 kb on + strand, within Shew_1444 at 1661.837 kb on - strand, within Shew_1444 at 1661.986 kb on - strand at 1662.196 kb on + strand, within Shew_1445 at 1662.820 kb on + strand, within Shew_1446 at 1662.944 kb on - strand, within Shew_1446 at 1662.997 kb on - strand, within Shew_1446 at 1663.025 kb on - strand, within Shew_1446 at 1663.037 kb on + strand, within Shew_1446 at 1663.186 kb on + strand, within Shew_1446
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 1,661,729 + Shew_1444 0.81 -1.3 1,661,837 - Shew_1444 0.89 +0.1 1,661,986 - -1.0 1,662,196 + Shew_1445 0.32 -1.4 1,662,820 + Shew_1446 0.10 +0.8 1,662,944 - Shew_1446 0.22 -1.3 1,662,997 - Shew_1446 0.27 +0.2 1,663,025 - Shew_1446 0.30 -1.0 1,663,037 + Shew_1446 0.31 -1.6 1,663,186 + Shew_1446 0.46 +1.0
Or see this region's nucleotide sequence