Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1221 and Shew_1222 are separated by 363 nucleotides Shew_1222 and Shew_1223 are separated by 29 nucleotides Shew_1223 and Shew_1224 are separated by 132 nucleotides
Shew_1221: Shew_1221 - sodium ion-translocating decarboxylase, beta subunit (RefSeq), at 1,419,368 to 1,420,501
_1221
Shew_1222: Shew_1222 - hypothetical protein (RefSeq), at 1,420,865 to 1,421,050
_1222
Shew_1223: Shew_1223 - hypothetical protein (RefSeq), at 1,421,080 to 1,421,265
_1223
Shew_1224: Shew_1224 - sodium:dicarboxylate symporter (RefSeq), at 1,421,398 to 1,422,648
_1224
Position (kb) 1421
1422 Strain fitness (log2 ratio) -2
-1
0
1 at 1420.573 kb on + strand at 1420.581 kb on - strand at 1420.690 kb on - strand at 1420.975 kb on - strand, within Shew_1222 at 1421.139 kb on + strand, within Shew_1223 at 1421.575 kb on + strand, within Shew_1224 at 1421.705 kb on + strand, within Shew_1224 at 1421.713 kb on - strand, within Shew_1224 at 1422.135 kb on + strand, within Shew_1224
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 1,420,573 + -0.6 1,420,581 - +0.3 1,420,690 - +1.0 1,420,975 - Shew_1222 0.59 -0.4 1,421,139 + Shew_1223 0.32 -2.3 1,421,575 + Shew_1224 0.14 -0.1 1,421,705 + Shew_1224 0.25 -0.3 1,421,713 - Shew_1224 0.25 +0.0 1,422,135 + Shew_1224 0.59 -0.4
Or see this region's nucleotide sequence