Strain Fitness in Shewanella loihica PV-4 around Shew_0905

Experiment: Motility M3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0904 and Shew_0905 overlap by 4 nucleotidesShew_0905 and Shew_0906 overlap by 4 nucleotidesShew_0906 and Shew_0907 overlap by 11 nucleotides Shew_0904: Shew_0904 - GPR1/FUN34/yaaH family protein (RefSeq), at 1,026,007 to 1,026,573 _0904 Shew_0905: Shew_0905 - response regulator receiver protein (RefSeq), at 1,026,570 to 1,027,754 _0905 Shew_0906: Shew_0906 - Hpt protein (RefSeq), at 1,027,751 to 1,028,089 _0906 Shew_0907: Shew_0907 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 1,028,079 to 1,030,838 _0907 Position (kb) 1026 1027 1028Strain fitness (log2 ratio) -2 -1 0 1 2at 1025.652 kb on - strandat 1025.921 kb on + strandat 1026.266 kb on - strand, within Shew_0904at 1026.561 kb on + strandat 1026.561 kb on + strandat 1026.634 kb on + strandat 1026.733 kb on + strand, within Shew_0905at 1026.733 kb on + strand, within Shew_0905at 1026.733 kb on + strand, within Shew_0905at 1026.751 kb on - strand, within Shew_0905at 1026.965 kb on + strand, within Shew_0905at 1027.019 kb on + strand, within Shew_0905at 1027.492 kb on - strand, within Shew_0905at 1027.978 kb on - strand, within Shew_0906at 1027.993 kb on - strand, within Shew_0906at 1028.347 kb on + strandat 1028.471 kb on - strand, within Shew_0907at 1028.563 kb on + strand, within Shew_0907at 1028.563 kb on + strand, within Shew_0907at 1028.571 kb on - strand, within Shew_0907at 1028.572 kb on + strand, within Shew_0907at 1028.611 kb on + strand, within Shew_0907at 1028.623 kb on - strand, within Shew_0907

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M3
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1,025,652 - -0.1
1,025,921 + -0.7
1,026,266 - Shew_0904 0.46 -0.7
1,026,561 + +0.1
1,026,561 + +0.2
1,026,634 + +0.7
1,026,733 + Shew_0905 0.14 +0.3
1,026,733 + Shew_0905 0.14 -0.0
1,026,733 + Shew_0905 0.14 -0.4
1,026,751 - Shew_0905 0.15 +1.8
1,026,965 + Shew_0905 0.33 +2.2
1,027,019 + Shew_0905 0.38 -0.0
1,027,492 - Shew_0905 0.78 -0.0
1,027,978 - Shew_0906 0.67 +0.2
1,027,993 - Shew_0906 0.71 -0.1
1,028,347 + -0.1
1,028,471 - Shew_0907 0.14 +0.5
1,028,563 + Shew_0907 0.18 +0.1
1,028,563 + Shew_0907 0.18 +0.4
1,028,571 - Shew_0907 0.18 -0.9
1,028,572 + Shew_0907 0.18 +0.3
1,028,611 + Shew_0907 0.19 -1.8
1,028,623 - Shew_0907 0.20 -0.5

Or see this region's nucleotide sequence