Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0793 and Shew_0794 are separated by 112 nucleotides Shew_0794 and Shew_0795 are separated by 27 nucleotides Shew_0795 and Shew_0796 are separated by 302 nucleotides
Shew_0793: Shew_0793 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 905,116 to 906,681
_0793
Shew_0794: Shew_0794 - diguanylate cyclase (RefSeq), at 906,794 to 907,978
_0794
Shew_0795: Shew_0795 - hypothetical protein (RefSeq), at 908,006 to 908,410
_0795
Shew_0796: Shew_0796 - hypothetical protein (RefSeq), at 908,713 to 908,910
_0796
Position (kb) 906
907
908 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 905.849 kb on - strand, within Shew_0793 at 906.288 kb on - strand, within Shew_0793 at 906.720 kb on - strand at 906.720 kb on - strand at 907.226 kb on + strand, within Shew_0794 at 907.234 kb on - strand, within Shew_0794 at 907.355 kb on - strand, within Shew_0794 at 907.614 kb on + strand, within Shew_0794 at 907.912 kb on + strand at 908.002 kb on - strand at 908.089 kb on + strand, within Shew_0795 at 908.332 kb on + strand, within Shew_0795 at 908.412 kb on + strand at 908.510 kb on - strand at 908.611 kb on - strand at 908.710 kb on + strand at 908.710 kb on + strand at 908.718 kb on - strand at 908.918 kb on + strand at 908.926 kb on - strand at 908.936 kb on + strand at 908.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 905,849 - Shew_0793 0.47 +0.1 906,288 - Shew_0793 0.75 +1.5 906,720 - +0.0 906,720 - +1.1 907,226 + Shew_0794 0.36 +1.0 907,234 - Shew_0794 0.37 -0.2 907,355 - Shew_0794 0.47 +0.9 907,614 + Shew_0794 0.69 -0.1 907,912 + +0.2 908,002 - +0.7 908,089 + Shew_0795 0.20 +0.6 908,332 + Shew_0795 0.80 -0.8 908,412 + -1.1 908,510 - -0.1 908,611 - +0.1 908,710 + -1.1 908,710 + -0.2 908,718 - +0.4 908,918 + +0.6 908,926 - -0.0 908,936 + -2.8 908,975 - -1.3
Or see this region's nucleotide sequence