Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0699 and Shew_0700 are separated by 306 nucleotides Shew_0700 and Shew_0701 are separated by 357 nucleotides Shew_0701 and Shew_0702 are separated by 14 nucleotides
Shew_0699: Shew_0699 - Na+/H+ antiporter (RefSeq), at 793,188 to 794,663
_0699
Shew_0700: Shew_0700 - pirin domain-containing protein (RefSeq), at 794,970 to 795,830
_0700
Shew_0701: Shew_0701 - hypothetical protein (RefSeq), at 796,188 to 796,769
_0701
Shew_0702: Shew_0702 - rhomboid family protein (RefSeq), at 796,784 to 797,866
_0702
Position (kb) 794
795
796 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 793.984 kb on - strand, within Shew_0699 at 794.126 kb on - strand, within Shew_0699 at 794.328 kb on + strand, within Shew_0699 at 794.555 kb on + strand at 794.581 kb on + strand at 795.856 kb on + strand at 796.011 kb on + strand at 796.220 kb on + strand at 796.404 kb on - strand, within Shew_0701 at 796.406 kb on + strand, within Shew_0701 at 796.503 kb on - strand, within Shew_0701 at 796.505 kb on + strand, within Shew_0701 at 796.553 kb on - strand, within Shew_0701 at 796.661 kb on + strand, within Shew_0701 at 796.667 kb on + strand, within Shew_0701 at 796.668 kb on + strand, within Shew_0701 at 796.698 kb on - strand, within Shew_0701 at 796.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 793,984 - Shew_0699 0.54 -0.0 794,126 - Shew_0699 0.64 -3.8 794,328 + Shew_0699 0.77 +0.0 794,555 + +0.3 794,581 + +0.7 795,856 + +0.8 796,011 + +0.6 796,220 + -0.2 796,404 - Shew_0701 0.37 +0.4 796,406 + Shew_0701 0.37 +0.2 796,503 - Shew_0701 0.54 +0.7 796,505 + Shew_0701 0.54 -0.0 796,553 - Shew_0701 0.63 +2.2 796,661 + Shew_0701 0.81 -0.9 796,667 + Shew_0701 0.82 +0.2 796,668 + Shew_0701 0.82 -0.0 796,698 - Shew_0701 0.88 -0.3 796,728 - -0.4
Or see this region's nucleotide sequence