Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0581 and Shew_0582 are separated by 97 nucleotides Shew_0582 and Shew_0583 overlap by 4 nucleotides Shew_0583 and Shew_0584 are separated by 110 nucleotides
Shew_0581: Shew_0581 - hypothetical protein (RefSeq), at 659,179 to 659,979
_0581
Shew_0582: Shew_0582 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 660,077 to 661,414
_0582
Shew_0583: Shew_0583 - two component transcriptional regulator (RefSeq), at 661,411 to 662,085
_0583
Shew_0584: Shew_0584 - hypothetical protein (RefSeq), at 662,196 to 662,534
_0584
Position (kb) 660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 659.327 kb on + strand, within Shew_0581 at 659.335 kb on - strand, within Shew_0581 at 659.417 kb on - strand, within Shew_0581 at 659.417 kb on - strand, within Shew_0581 at 659.448 kb on + strand, within Shew_0581 at 659.456 kb on - strand, within Shew_0581 at 659.497 kb on - strand, within Shew_0581 at 659.826 kb on + strand, within Shew_0581 at 659.894 kb on + strand, within Shew_0581 at 660.208 kb on - strand at 660.265 kb on + strand, within Shew_0582 at 660.379 kb on + strand, within Shew_0582 at 660.474 kb on - strand, within Shew_0582 at 660.761 kb on + strand, within Shew_0582 at 660.820 kb on + strand, within Shew_0582 at 661.022 kb on + strand, within Shew_0582 at 661.093 kb on - strand, within Shew_0582 at 661.216 kb on + strand, within Shew_0582 at 661.438 kb on + strand at 661.474 kb on - strand at 661.685 kb on - strand, within Shew_0583 at 661.685 kb on - strand, within Shew_0583 at 662.378 kb on + strand, within Shew_0584
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 659,327 + Shew_0581 0.18 -0.8 659,335 - Shew_0581 0.19 -2.9 659,417 - Shew_0581 0.30 +0.1 659,417 - Shew_0581 0.30 -0.9 659,448 + Shew_0581 0.34 -0.5 659,456 - Shew_0581 0.35 +1.4 659,497 - Shew_0581 0.40 -0.3 659,826 + Shew_0581 0.81 +0.1 659,894 + Shew_0581 0.89 -0.4 660,208 - +0.1 660,265 + Shew_0582 0.14 -0.7 660,379 + Shew_0582 0.23 +1.9 660,474 - Shew_0582 0.30 +0.9 660,761 + Shew_0582 0.51 -1.3 660,820 + Shew_0582 0.56 +0.2 661,022 + Shew_0582 0.71 +0.5 661,093 - Shew_0582 0.76 +1.2 661,216 + Shew_0582 0.85 +0.8 661,438 + +0.6 661,474 - -2.4 661,685 - Shew_0583 0.41 -1.0 661,685 - Shew_0583 0.41 +0.6 662,378 + Shew_0584 0.54 -0.4
Or see this region's nucleotide sequence