Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argD and Shew_0579 are separated by 136 nucleotides Shew_0579 and Shew_0580 are separated by 6 nucleotides
Shew_0578: argD - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq), at 655,195 to 656,412
argD
Shew_0579: Shew_0579 - arginine N-succinyltransferase (RefSeq), at 656,549 to 657,568
_0579
Shew_0580: Shew_0580 - succinylglutamic semialdehyde dehydrogenase (RefSeq), at 657,575 to 659,038
_0580
Position (kb) 656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 655.609 kb on + strand, within argD at 655.697 kb on - strand, within argD at 655.772 kb on - strand, within argD at 656.056 kb on + strand, within argD at 656.128 kb on - strand, within argD at 656.284 kb on + strand, within argD at 656.292 kb on - strand at 656.292 kb on - strand at 656.535 kb on - strand at 656.877 kb on + strand, within Shew_0579 at 656.885 kb on - strand, within Shew_0579 at 657.112 kb on - strand, within Shew_0579 at 657.233 kb on + strand, within Shew_0579 at 657.265 kb on + strand, within Shew_0579 at 657.424 kb on + strand, within Shew_0579 at 657.689 kb on - strand at 657.699 kb on - strand at 657.797 kb on - strand, within Shew_0580 at 658.165 kb on + strand, within Shew_0580 at 658.303 kb on + strand, within Shew_0580 at 658.524 kb on - strand, within Shew_0580
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 655,609 + argD Shew_0578 0.34 -1.3 655,697 - argD Shew_0578 0.41 -0.6 655,772 - argD Shew_0578 0.47 +1.5 656,056 + argD Shew_0578 0.71 -0.4 656,128 - argD Shew_0578 0.77 -0.3 656,284 + argD Shew_0578 0.89 -0.7 656,292 - +0.4 656,292 - -0.3 656,535 - +0.9 656,877 + Shew_0579 0.32 +0.0 656,885 - Shew_0579 0.33 +0.9 657,112 - Shew_0579 0.55 +0.9 657,233 + Shew_0579 0.67 +0.5 657,265 + Shew_0579 0.70 +1.0 657,424 + Shew_0579 0.86 -0.2 657,689 - +0.4 657,699 - -2.9 657,797 - Shew_0580 0.15 -0.6 658,165 + Shew_0580 0.40 -0.1 658,303 + Shew_0580 0.50 -1.2 658,524 - Shew_0580 0.65 -0.4
Or see this region's nucleotide sequence