Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4226

Experiment: m.b. nitrite 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4223 and Dshi_4224 are separated by 0 nucleotidesDshi_4224 and Dshi_4225 are separated by 9 nucleotidesDshi_4225 and Dshi_4226 are separated by 121 nucleotides Dshi_4223: Dshi_4223 - Ferritin Dps family protein (RefSeq), at 70,690 to 71,160 _4223 Dshi_4224: Dshi_4224 - hypothetical protein (RefSeq), at 71,161 to 71,427 _4224 Dshi_4225: Dshi_4225 - hypothetical protein (RefSeq), at 71,437 to 71,592 _4225 Dshi_4226: Dshi_4226 - hypothetical protein (RefSeq), at 71,714 to 72,295 _4226 Position (kb) 71 72 73Strain fitness (log2 ratio) -1 0 1at 70.880 kb on + strand, within Dshi_4223at 71.198 kb on + strand, within Dshi_4224at 71.525 kb on - strand, within Dshi_4225at 71.530 kb on - strand, within Dshi_4225at 72.136 kb on + strand, within Dshi_4226at 72.213 kb on + strand, within Dshi_4226

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM
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70,880 + Dshi_4223 0.40 -0.3
71,198 + Dshi_4224 0.14 -0.0
71,525 - Dshi_4225 0.56 +1.5
71,530 - Dshi_4225 0.60 +0.2
72,136 + Dshi_4226 0.73 -1.0
72,213 + Dshi_4226 0.86 -0.7

Or see this region's nucleotide sequence