Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1655

Experiment: m.b. nitrite 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1654 and Dshi_1655 are separated by 39 nucleotidesDshi_1655 and Dshi_1656 overlap by 4 nucleotidesDshi_1656 and Dshi_1657 overlap by 4 nucleotides Dshi_1654: Dshi_1654 - Beta-glucosidase (RefSeq), at 1,719,861 to 1,721,168 _1654 Dshi_1655: Dshi_1655 - glucokinase (EC 2.7.1.2) (from data), at 1,721,208 to 1,722,179 _1655 Dshi_1656: Dshi_1656 - ABC-3 protein (RefSeq), at 1,722,176 to 1,723,027 _1656 Dshi_1657: Dshi_1657 - ABC-3 protein (RefSeq), at 1,723,024 to 1,723,923 _1657 Position (kb) 1721 1722 1723Strain fitness (log2 ratio) -2 -1 0 1at 1720.225 kb on + strand, within Dshi_1654at 1720.369 kb on - strand, within Dshi_1654at 1720.405 kb on + strand, within Dshi_1654at 1720.508 kb on + strand, within Dshi_1654at 1720.594 kb on + strand, within Dshi_1654at 1720.617 kb on + strand, within Dshi_1654at 1720.625 kb on - strand, within Dshi_1654at 1720.639 kb on - strand, within Dshi_1654at 1720.644 kb on - strand, within Dshi_1654at 1720.718 kb on + strand, within Dshi_1654at 1720.721 kb on - strand, within Dshi_1654at 1720.777 kb on + strand, within Dshi_1654at 1720.780 kb on - strand, within Dshi_1654at 1720.923 kb on + strand, within Dshi_1654at 1720.934 kb on + strand, within Dshi_1654at 1720.971 kb on - strand, within Dshi_1654at 1720.993 kb on - strand, within Dshi_1654at 1721.004 kb on - strand, within Dshi_1654at 1721.132 kb on - strandat 1721.134 kb on + strandat 1721.284 kb on + strandat 1721.347 kb on + strand, within Dshi_1655at 1721.411 kb on + strand, within Dshi_1655at 1721.647 kb on + strand, within Dshi_1655at 1721.925 kb on - strand, within Dshi_1655at 1721.939 kb on + strand, within Dshi_1655at 1722.208 kb on - strandat 1722.269 kb on - strand, within Dshi_1656at 1722.364 kb on + strand, within Dshi_1656at 1722.367 kb on - strand, within Dshi_1656at 1722.447 kb on + strand, within Dshi_1656at 1722.447 kb on + strand, within Dshi_1656at 1722.447 kb on + strand, within Dshi_1656at 1722.455 kb on - strand, within Dshi_1656at 1722.455 kb on - strand, within Dshi_1656at 1722.455 kb on - strand, within Dshi_1656at 1722.455 kb on - strand, within Dshi_1656at 1722.505 kb on + strand, within Dshi_1656at 1722.740 kb on + strand, within Dshi_1656at 1722.849 kb on + strand, within Dshi_1656at 1722.935 kb on - strand, within Dshi_1656at 1722.942 kb on + strandat 1723.043 kb on - strandat 1723.043 kb on - strandat 1723.066 kb on - strandat 1723.078 kb on - strandat 1723.091 kb on + strandat 1723.114 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM
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1,720,225 + Dshi_1654 0.28 +0.1
1,720,369 - Dshi_1654 0.39 -0.9
1,720,405 + Dshi_1654 0.42 +0.1
1,720,508 + Dshi_1654 0.49 -0.6
1,720,594 + Dshi_1654 0.56 -0.3
1,720,617 + Dshi_1654 0.58 -0.3
1,720,625 - Dshi_1654 0.58 -0.0
1,720,639 - Dshi_1654 0.59 -0.6
1,720,644 - Dshi_1654 0.60 -0.0
1,720,718 + Dshi_1654 0.66 -0.2
1,720,721 - Dshi_1654 0.66 +0.4
1,720,777 + Dshi_1654 0.70 +0.5
1,720,780 - Dshi_1654 0.70 -0.3
1,720,923 + Dshi_1654 0.81 -0.1
1,720,934 + Dshi_1654 0.82 +0.2
1,720,971 - Dshi_1654 0.85 +0.3
1,720,993 - Dshi_1654 0.87 +0.0
1,721,004 - Dshi_1654 0.87 +1.2
1,721,132 - +0.0
1,721,134 + -0.5
1,721,284 + +0.1
1,721,347 + Dshi_1655 0.14 -0.5
1,721,411 + Dshi_1655 0.21 -0.5
1,721,647 + Dshi_1655 0.45 -1.2
1,721,925 - Dshi_1655 0.74 -1.9
1,721,939 + Dshi_1655 0.75 -2.6
1,722,208 - +0.6
1,722,269 - Dshi_1656 0.11 -0.5
1,722,364 + Dshi_1656 0.22 +0.5
1,722,367 - Dshi_1656 0.22 +0.6
1,722,447 + Dshi_1656 0.32 -0.4
1,722,447 + Dshi_1656 0.32 -0.9
1,722,447 + Dshi_1656 0.32 +0.3
1,722,455 - Dshi_1656 0.33 -0.1
1,722,455 - Dshi_1656 0.33 +0.4
1,722,455 - Dshi_1656 0.33 +0.6
1,722,455 - Dshi_1656 0.33 +0.1
1,722,505 + Dshi_1656 0.39 -0.3
1,722,740 + Dshi_1656 0.66 +0.1
1,722,849 + Dshi_1656 0.79 +0.2
1,722,935 - Dshi_1656 0.89 -0.1
1,722,942 + -1.3
1,723,043 - +0.4
1,723,043 - -0.6
1,723,066 - -0.1
1,723,078 - -1.2
1,723,091 + +0.0
1,723,114 + -0.2

Or see this region's nucleotide sequence