Experiment: m.b. nitrite 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1491 and Dshi_1492 are separated by 58 nucleotides Dshi_1492 and Dshi_1493 are separated by 109 nucleotides Dshi_1493 and Dshi_1494 are separated by 130 nucleotides
Dshi_1491: Dshi_1491 - transcriptional regulator, AraC family (RefSeq), at 1,550,866 to 1,551,678
_1491
Dshi_1492: Dshi_1492 - tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq), at 1,551,737 to 1,552,627
_1492
Dshi_1493: Dshi_1493 - uridylate kinase (RefSeq), at 1,552,737 to 1,553,468
_1493
Dshi_1494: Dshi_1494 - ribosome recycling factor (RefSeq), at 1,553,599 to 1,554,165
_1494
Position (kb)
1551
1552
1553 Strain fitness (log2 ratio)
-1
0
1 at 1550.824 kb on - strand at 1551.082 kb on + strand, within Dshi_1491 at 1551.124 kb on - strand, within Dshi_1491 at 1551.248 kb on - strand, within Dshi_1491 at 1551.262 kb on + strand, within Dshi_1491 at 1551.274 kb on + strand, within Dshi_1491 at 1551.616 kb on + strand at 1551.625 kb on - strand at 1551.716 kb on - strand at 1553.462 kb on + strand at 1553.500 kb on + strand at 1553.500 kb on + strand at 1553.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM remove 1,550,824 - +0.3 1,551,082 + Dshi_1491 0.27 +0.1 1,551,124 - Dshi_1491 0.32 -1.3 1,551,248 - Dshi_1491 0.47 +0.7 1,551,262 + Dshi_1491 0.49 -0.3 1,551,274 + Dshi_1491 0.50 -0.0 1,551,616 + -0.3 1,551,625 - +0.1 1,551,716 - +0.8 1,553,462 + +0.6 1,553,500 + -0.7 1,553,500 + -1.0 1,553,532 - -0.1
Or see this region's nucleotide sequence