Experiment: m.b. nitrite 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0805 and Dshi_0806 are separated by 7 nucleotides Dshi_0806 and Dshi_0807 are separated by 6 nucleotides
Dshi_0805: Dshi_0805 - thiamine pyrophosphate protein central region (RefSeq), at 812,303 to 814,081
_0805
Dshi_0806: Dshi_0806 - hypothetical protein (RefSeq), at 814,089 to 815,120
_0806
Dshi_0807: Dshi_0807 - hypothetical protein (RefSeq), at 815,127 to 816,155
_0807
Position (kb) 814
815
816 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 814.074 kb on - strand at 814.139 kb on + strand at 814.208 kb on + strand, within Dshi_0806 at 814.218 kb on + strand, within Dshi_0806 at 814.237 kb on - strand, within Dshi_0806 at 814.241 kb on + strand, within Dshi_0806 at 814.317 kb on + strand, within Dshi_0806 at 814.396 kb on + strand, within Dshi_0806 at 814.582 kb on - strand, within Dshi_0806 at 814.612 kb on + strand, within Dshi_0806 at 814.622 kb on - strand, within Dshi_0806 at 814.630 kb on - strand, within Dshi_0806 at 814.709 kb on + strand, within Dshi_0806 at 814.917 kb on + strand, within Dshi_0806 at 814.920 kb on - strand, within Dshi_0806 at 814.981 kb on - strand, within Dshi_0806 at 815.027 kb on + strand at 815.151 kb on - strand at 815.194 kb on + strand at 815.306 kb on - strand, within Dshi_0807 at 815.333 kb on + strand, within Dshi_0807 at 815.388 kb on + strand, within Dshi_0807 at 815.634 kb on - strand, within Dshi_0807 at 815.710 kb on + strand, within Dshi_0807 at 815.938 kb on - strand, within Dshi_0807 at 816.034 kb on - strand, within Dshi_0807 at 816.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM remove 814,074 - +6.6 814,139 + +7.3 814,208 + Dshi_0806 0.12 +6.5 814,218 + Dshi_0806 0.12 +6.4 814,237 - Dshi_0806 0.14 +8.1 814,241 + Dshi_0806 0.15 +7.5 814,317 + Dshi_0806 0.22 +6.6 814,396 + Dshi_0806 0.30 +7.1 814,582 - Dshi_0806 0.48 +7.5 814,612 + Dshi_0806 0.51 +6.7 814,622 - Dshi_0806 0.52 +6.7 814,630 - Dshi_0806 0.52 +6.8 814,709 + Dshi_0806 0.60 +7.1 814,917 + Dshi_0806 0.80 +6.9 814,920 - Dshi_0806 0.81 +7.2 814,981 - Dshi_0806 0.86 +7.0 815,027 + +6.6 815,151 - +0.5 815,194 + +1.4 815,306 - Dshi_0807 0.17 -0.0 815,333 + Dshi_0807 0.20 +0.6 815,388 + Dshi_0807 0.25 +1.2 815,634 - Dshi_0807 0.49 +0.4 815,710 + Dshi_0807 0.57 -0.3 815,938 - Dshi_0807 0.79 +0.8 816,034 - Dshi_0807 0.88 -0.5 816,119 - +0.8
Or see this region's nucleotide sequence