Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0751

Experiment: m.b. nitrite 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0750 and Dshi_0751 are separated by 180 nucleotidesDshi_0751 and Dshi_0752 are separated by 42 nucleotidesDshi_0752 and Dshi_0753 overlap by 13 nucleotides Dshi_0750: Dshi_0750 - hypothetical protein (RefSeq), at 760,995 to 761,789 _0750 Dshi_0751: Dshi_0751 - protein of unknown function DUF344 (RefSeq), at 761,970 to 762,914 _0751 Dshi_0752: Dshi_0752 - protein of unknown function DUF1007 (RefSeq), at 762,957 to 763,637 _0752 Dshi_0753: Dshi_0753 - high-affinity nickel-transporter (RefSeq), at 763,625 to 764,581 _0753 Position (kb) 761 762 763Strain fitness (log2 ratio) -1 0 1at 760.987 kb on - strandat 761.057 kb on - strandat 761.062 kb on - strandat 761.189 kb on - strand, within Dshi_0750at 761.205 kb on + strand, within Dshi_0750at 761.307 kb on - strand, within Dshi_0750at 761.403 kb on - strand, within Dshi_0750at 761.455 kb on + strand, within Dshi_0750at 761.482 kb on - strandat 761.490 kb on + strand, within Dshi_0750at 761.503 kb on + strand, within Dshi_0750at 761.511 kb on - strand, within Dshi_0750at 761.567 kb on + strand, within Dshi_0750at 761.659 kb on + strand, within Dshi_0750at 761.667 kb on - strand, within Dshi_0750at 761.722 kb on + strandat 761.722 kb on + strandat 761.826 kb on - strandat 761.862 kb on + strandat 761.954 kb on + strandat 761.962 kb on - strandat 761.967 kb on + strandat 762.032 kb on - strandat 762.183 kb on - strand, within Dshi_0751at 762.185 kb on - strand, within Dshi_0751at 762.187 kb on + strand, within Dshi_0751at 762.251 kb on - strand, within Dshi_0751at 762.311 kb on + strand, within Dshi_0751at 762.319 kb on - strand, within Dshi_0751at 762.374 kb on - strand, within Dshi_0751at 762.402 kb on - strand, within Dshi_0751at 762.423 kb on + strand, within Dshi_0751at 762.434 kb on + strand, within Dshi_0751at 762.442 kb on - strand, within Dshi_0751at 762.554 kb on + strand, within Dshi_0751at 762.572 kb on + strand, within Dshi_0751at 762.662 kb on + strand, within Dshi_0751at 762.664 kb on - strand, within Dshi_0751at 762.713 kb on - strand, within Dshi_0751at 762.803 kb on - strand, within Dshi_0751at 762.846 kb on - strandat 762.864 kb on + strandat 762.880 kb on - strandat 762.984 kb on + strandat 762.986 kb on + strandat 762.986 kb on + strandat 763.094 kb on + strand, within Dshi_0752at 763.170 kb on - strand, within Dshi_0752at 763.219 kb on - strand, within Dshi_0752at 763.342 kb on + strand, within Dshi_0752at 763.381 kb on + strand, within Dshi_0752at 763.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM
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760,987 - +0.2
761,057 - -0.3
761,062 - -1.0
761,189 - Dshi_0750 0.24 +0.4
761,205 + Dshi_0750 0.26 +0.3
761,307 - Dshi_0750 0.39 +1.0
761,403 - Dshi_0750 0.51 -0.2
761,455 + Dshi_0750 0.58 +0.2
761,482 - -0.4
761,490 + Dshi_0750 0.62 +0.0
761,503 + Dshi_0750 0.64 -0.1
761,511 - Dshi_0750 0.65 -1.5
761,567 + Dshi_0750 0.72 -0.1
761,659 + Dshi_0750 0.84 +0.7
761,667 - Dshi_0750 0.85 +0.1
761,722 + +0.6
761,722 + +0.4
761,826 - -0.1
761,862 + -0.1
761,954 + -0.0
761,962 - +0.6
761,967 + +0.3
762,032 - -1.2
762,183 - Dshi_0751 0.23 -0.1
762,185 - Dshi_0751 0.23 +0.3
762,187 + Dshi_0751 0.23 -0.8
762,251 - Dshi_0751 0.30 +1.6
762,311 + Dshi_0751 0.36 +0.7
762,319 - Dshi_0751 0.37 +0.2
762,374 - Dshi_0751 0.43 +0.7
762,402 - Dshi_0751 0.46 +0.4
762,423 + Dshi_0751 0.48 +0.2
762,434 + Dshi_0751 0.49 +0.9
762,442 - Dshi_0751 0.50 -0.3
762,554 + Dshi_0751 0.62 +0.3
762,572 + Dshi_0751 0.64 -0.1
762,662 + Dshi_0751 0.73 +0.0
762,664 - Dshi_0751 0.73 +0.7
762,713 - Dshi_0751 0.79 -0.1
762,803 - Dshi_0751 0.88 -0.6
762,846 - -0.4
762,864 + -0.2
762,880 - +0.1
762,984 + +0.6
762,986 + +0.3
762,986 + +0.4
763,094 + Dshi_0752 0.20 +0.3
763,170 - Dshi_0752 0.31 +0.2
763,219 - Dshi_0752 0.38 -0.9
763,342 + Dshi_0752 0.57 +0.1
763,381 + Dshi_0752 0.62 -1.3
763,606 + +0.3

Or see this region's nucleotide sequence