Experiment: m.b. nitrite 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0750 and Dshi_0751 are separated by 180 nucleotides Dshi_0751 and Dshi_0752 are separated by 42 nucleotides Dshi_0752 and Dshi_0753 overlap by 13 nucleotides
Dshi_0750: Dshi_0750 - hypothetical protein (RefSeq), at 760,995 to 761,789
_0750
Dshi_0751: Dshi_0751 - protein of unknown function DUF344 (RefSeq), at 761,970 to 762,914
_0751
Dshi_0752: Dshi_0752 - protein of unknown function DUF1007 (RefSeq), at 762,957 to 763,637
_0752
Dshi_0753: Dshi_0753 - high-affinity nickel-transporter (RefSeq), at 763,625 to 764,581
_0753
Position (kb)
761
762
763 Strain fitness (log2 ratio)
-1
0
1 at 760.987 kb on - strand at 761.057 kb on - strand at 761.062 kb on - strand at 761.189 kb on - strand, within Dshi_0750 at 761.205 kb on + strand, within Dshi_0750 at 761.307 kb on - strand, within Dshi_0750 at 761.403 kb on - strand, within Dshi_0750 at 761.455 kb on + strand, within Dshi_0750 at 761.482 kb on - strand at 761.490 kb on + strand, within Dshi_0750 at 761.503 kb on + strand, within Dshi_0750 at 761.511 kb on - strand, within Dshi_0750 at 761.567 kb on + strand, within Dshi_0750 at 761.659 kb on + strand, within Dshi_0750 at 761.667 kb on - strand, within Dshi_0750 at 761.722 kb on + strand at 761.722 kb on + strand at 761.826 kb on - strand at 761.862 kb on + strand at 761.954 kb on + strand at 761.962 kb on - strand at 761.967 kb on + strand at 762.032 kb on - strand at 762.183 kb on - strand, within Dshi_0751 at 762.185 kb on - strand, within Dshi_0751 at 762.187 kb on + strand, within Dshi_0751 at 762.251 kb on - strand, within Dshi_0751 at 762.311 kb on + strand, within Dshi_0751 at 762.319 kb on - strand, within Dshi_0751 at 762.374 kb on - strand, within Dshi_0751 at 762.402 kb on - strand, within Dshi_0751 at 762.423 kb on + strand, within Dshi_0751 at 762.434 kb on + strand, within Dshi_0751 at 762.442 kb on - strand, within Dshi_0751 at 762.554 kb on + strand, within Dshi_0751 at 762.572 kb on + strand, within Dshi_0751 at 762.662 kb on + strand, within Dshi_0751 at 762.664 kb on - strand, within Dshi_0751 at 762.713 kb on - strand, within Dshi_0751 at 762.803 kb on - strand, within Dshi_0751 at 762.846 kb on - strand at 762.864 kb on + strand at 762.880 kb on - strand at 762.984 kb on + strand at 762.986 kb on + strand at 762.986 kb on + strand at 763.094 kb on + strand, within Dshi_0752 at 763.170 kb on - strand, within Dshi_0752 at 763.219 kb on - strand, within Dshi_0752 at 763.342 kb on + strand, within Dshi_0752 at 763.381 kb on + strand, within Dshi_0752 at 763.606 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM remove 760,987 - +0.2 761,057 - -0.3 761,062 - -1.0 761,189 - Dshi_0750 0.24 +0.4 761,205 + Dshi_0750 0.26 +0.3 761,307 - Dshi_0750 0.39 +1.0 761,403 - Dshi_0750 0.51 -0.2 761,455 + Dshi_0750 0.58 +0.2 761,482 - -0.4 761,490 + Dshi_0750 0.62 +0.0 761,503 + Dshi_0750 0.64 -0.1 761,511 - Dshi_0750 0.65 -1.5 761,567 + Dshi_0750 0.72 -0.1 761,659 + Dshi_0750 0.84 +0.7 761,667 - Dshi_0750 0.85 +0.1 761,722 + +0.6 761,722 + +0.4 761,826 - -0.1 761,862 + -0.1 761,954 + -0.0 761,962 - +0.6 761,967 + +0.3 762,032 - -1.2 762,183 - Dshi_0751 0.23 -0.1 762,185 - Dshi_0751 0.23 +0.3 762,187 + Dshi_0751 0.23 -0.8 762,251 - Dshi_0751 0.30 +1.6 762,311 + Dshi_0751 0.36 +0.7 762,319 - Dshi_0751 0.37 +0.2 762,374 - Dshi_0751 0.43 +0.7 762,402 - Dshi_0751 0.46 +0.4 762,423 + Dshi_0751 0.48 +0.2 762,434 + Dshi_0751 0.49 +0.9 762,442 - Dshi_0751 0.50 -0.3 762,554 + Dshi_0751 0.62 +0.3 762,572 + Dshi_0751 0.64 -0.1 762,662 + Dshi_0751 0.73 +0.0 762,664 - Dshi_0751 0.73 +0.7 762,713 - Dshi_0751 0.79 -0.1 762,803 - Dshi_0751 0.88 -0.6 762,846 - -0.4 762,864 + -0.2 762,880 - +0.1 762,984 + +0.6 762,986 + +0.3 762,986 + +0.4 763,094 + Dshi_0752 0.20 +0.3 763,170 - Dshi_0752 0.31 +0.2 763,219 - Dshi_0752 0.38 -0.9 763,342 + Dshi_0752 0.57 +0.1 763,381 + Dshi_0752 0.62 -1.3 763,606 + +0.3
Or see this region's nucleotide sequence