Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0723

Experiment: m.b. nitrite 0.6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0721 and Dshi_0722 are separated by 14 nucleotidesDshi_0722 and Dshi_0723 are separated by 358 nucleotidesDshi_0723 and Dshi_0724 are separated by 64 nucleotidesDshi_0724 and Dshi_0725 are separated by 108 nucleotides Dshi_0721: Dshi_0721 - hypothetical protein (RefSeq), at 728,665 to 729,036 _0721 Dshi_0722: Dshi_0722 - hypothetical protein (RefSeq), at 729,051 to 729,410 _0722 Dshi_0723: Dshi_0723 - Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) (from data), at 729,769 to 731,814 _0723 Dshi_0724: Dshi_0724 - hypothetical protein (RefSeq), at 731,879 to 732,328 _0724 Dshi_0725: Dshi_0725 - hypothetical protein (RefSeq), at 732,437 to 733,432 _0725 Position (kb) 729 730 731 732Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 728.890 kb on + strand, within Dshi_0721at 729.192 kb on + strand, within Dshi_0722at 729.192 kb on + strand, within Dshi_0722at 729.304 kb on + strand, within Dshi_0722at 729.347 kb on + strand, within Dshi_0722at 729.376 kb on + strandat 729.416 kb on + strandat 729.544 kb on + strandat 729.562 kb on - strandat 729.684 kb on + strandat 729.694 kb on - strandat 729.817 kb on + strandat 729.863 kb on + strandat 729.871 kb on - strandat 730.430 kb on + strand, within Dshi_0723at 730.480 kb on - strand, within Dshi_0723at 730.507 kb on - strand, within Dshi_0723at 730.539 kb on + strand, within Dshi_0723at 730.550 kb on + strand, within Dshi_0723at 730.554 kb on + strand, within Dshi_0723at 730.554 kb on + strand, within Dshi_0723at 730.561 kb on + strand, within Dshi_0723at 730.644 kb on + strand, within Dshi_0723at 730.644 kb on + strand, within Dshi_0723at 730.674 kb on + strand, within Dshi_0723at 730.680 kb on - strand, within Dshi_0723at 730.721 kb on + strand, within Dshi_0723at 730.721 kb on + strand, within Dshi_0723at 730.756 kb on - strand, within Dshi_0723at 730.838 kb on - strand, within Dshi_0723at 730.878 kb on - strand, within Dshi_0723at 731.054 kb on + strand, within Dshi_0723at 731.062 kb on + strand, within Dshi_0723at 731.107 kb on + strand, within Dshi_0723at 731.250 kb on + strand, within Dshi_0723at 731.936 kb on + strand, within Dshi_0724at 732.090 kb on + strand, within Dshi_0724at 732.167 kb on - strand, within Dshi_0724at 732.176 kb on + strand, within Dshi_0724at 732.176 kb on + strand, within Dshi_0724at 732.176 kb on + strand, within Dshi_0724at 732.176 kb on + strand, within Dshi_0724at 732.176 kb on + strand, within Dshi_0724at 732.176 kb on + strand, within Dshi_0724at 732.184 kb on - strand, within Dshi_0724at 732.184 kb on - strand, within Dshi_0724at 732.184 kb on - strand, within Dshi_0724at 732.222 kb on - strand, within Dshi_0724at 732.248 kb on - strand, within Dshi_0724at 732.330 kb on - strandat 732.432 kb on - strandat 732.440 kb on - strandat 732.451 kb on + strandat 732.459 kb on - strandat 732.459 kb on - strandat 732.459 kb on - strandat 732.459 kb on - strandat 732.459 kb on - strandat 732.570 kb on + strand, within Dshi_0725at 732.622 kb on - strand, within Dshi_0725at 732.688 kb on + strand, within Dshi_0725at 732.738 kb on + strand, within Dshi_0725at 732.788 kb on + strand, within Dshi_0725at 732.814 kb on + strand, within Dshi_0725

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM
remove
728,890 + Dshi_0721 0.60 -0.1
729,192 + Dshi_0722 0.39 -0.2
729,192 + Dshi_0722 0.39 -1.4
729,304 + Dshi_0722 0.70 -0.2
729,347 + Dshi_0722 0.82 -0.4
729,376 + +1.5
729,416 + +1.4
729,544 + +1.2
729,562 - +1.1
729,684 + +0.4
729,694 - +1.6
729,817 + +1.4
729,863 + +2.3
729,871 - +2.2
730,430 + Dshi_0723 0.32 +1.7
730,480 - Dshi_0723 0.35 +3.3
730,507 - Dshi_0723 0.36 +2.2
730,539 + Dshi_0723 0.38 +2.3
730,550 + Dshi_0723 0.38 +2.2
730,554 + Dshi_0723 0.38 +2.4
730,554 + Dshi_0723 0.38 +2.0
730,561 + Dshi_0723 0.39 +3.5
730,644 + Dshi_0723 0.43 +2.4
730,644 + Dshi_0723 0.43 +2.4
730,674 + Dshi_0723 0.44 +2.2
730,680 - Dshi_0723 0.45 +2.7
730,721 + Dshi_0723 0.47 +3.8
730,721 + Dshi_0723 0.47 +2.3
730,756 - Dshi_0723 0.48 +3.1
730,838 - Dshi_0723 0.52 +2.5
730,878 - Dshi_0723 0.54 +2.4
731,054 + Dshi_0723 0.63 +2.8
731,062 + Dshi_0723 0.63 +3.8
731,107 + Dshi_0723 0.65 +2.1
731,250 + Dshi_0723 0.72 +2.6
731,936 + Dshi_0724 0.13 +1.0
732,090 + Dshi_0724 0.47 +1.8
732,167 - Dshi_0724 0.64 +0.2
732,176 + Dshi_0724 0.66 +0.2
732,176 + Dshi_0724 0.66 -1.2
732,176 + Dshi_0724 0.66 -1.9
732,176 + Dshi_0724 0.66 -1.0
732,176 + Dshi_0724 0.66 +0.3
732,176 + Dshi_0724 0.66 -0.6
732,184 - Dshi_0724 0.68 +0.9
732,184 - Dshi_0724 0.68 +0.2
732,184 - Dshi_0724 0.68 -0.3
732,222 - Dshi_0724 0.76 +0.9
732,248 - Dshi_0724 0.82 -0.1
732,330 - +0.2
732,432 - +0.3
732,440 - -0.4
732,451 + -0.2
732,459 - -0.3
732,459 - +0.0
732,459 - +0.2
732,459 - +0.0
732,459 - +0.2
732,570 + Dshi_0725 0.13 +0.0
732,622 - Dshi_0725 0.19 +0.8
732,688 + Dshi_0725 0.25 +1.2
732,738 + Dshi_0725 0.30 +0.4
732,788 + Dshi_0725 0.35 +0.6
732,814 + Dshi_0725 0.38 +0.9

Or see this region's nucleotide sequence