Experiment: m.b. nitrite 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0658 and Dshi_0659 are separated by 177 nucleotides Dshi_0659 and Dshi_0660 are separated by 52 nucleotides
Dshi_0658: Dshi_0658 - ABC transporter related (RefSeq), at 661,169 to 662,770
_0658
Dshi_0659: Dshi_0659 - oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 662,948 to 664,309
_0659
Dshi_0660: Dshi_0660 - transcriptional regulator, Crp/Fnr family (RefSeq), at 664,362 to 665,111
_0660
Position (kb) 662
663
664
665 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 661.991 kb on - strand, within Dshi_0658 at 662.026 kb on + strand, within Dshi_0658 at 662.103 kb on + strand, within Dshi_0658 at 662.104 kb on - strand, within Dshi_0658 at 662.172 kb on + strand, within Dshi_0658 at 662.214 kb on - strand, within Dshi_0658 at 662.261 kb on - strand, within Dshi_0658 at 662.273 kb on + strand, within Dshi_0658 at 662.311 kb on + strand, within Dshi_0658 at 662.319 kb on - strand, within Dshi_0658 at 662.348 kb on - strand, within Dshi_0658 at 662.352 kb on + strand, within Dshi_0658 at 662.509 kb on - strand, within Dshi_0658 at 662.590 kb on + strand, within Dshi_0658 at 662.590 kb on + strand, within Dshi_0658 at 662.591 kb on + strand, within Dshi_0658 at 662.613 kb on + strand at 662.613 kb on + strand at 662.613 kb on + strand at 662.614 kb on + strand at 662.637 kb on + strand at 662.845 kb on + strand at 663.037 kb on + strand at 663.099 kb on - strand, within Dshi_0659 at 663.112 kb on - strand, within Dshi_0659 at 663.116 kb on + strand, within Dshi_0659 at 663.122 kb on - strand, within Dshi_0659 at 663.246 kb on - strand, within Dshi_0659 at 663.301 kb on + strand, within Dshi_0659 at 663.311 kb on - strand, within Dshi_0659 at 663.312 kb on + strand, within Dshi_0659 at 663.375 kb on - strand, within Dshi_0659 at 663.508 kb on + strand, within Dshi_0659 at 663.516 kb on - strand, within Dshi_0659 at 663.520 kb on + strand, within Dshi_0659 at 663.530 kb on + strand, within Dshi_0659 at 663.818 kb on + strand, within Dshi_0659 at 663.840 kb on + strand, within Dshi_0659 at 663.855 kb on + strand, within Dshi_0659 at 663.875 kb on + strand, within Dshi_0659 at 664.090 kb on - strand, within Dshi_0659 at 664.095 kb on - strand, within Dshi_0659 at 664.209 kb on + strand at 664.234 kb on + strand at 664.324 kb on - strand at 664.338 kb on - strand at 664.349 kb on - strand at 664.439 kb on - strand, within Dshi_0660 at 664.442 kb on + strand, within Dshi_0660 at 664.450 kb on - strand, within Dshi_0660 at 664.450 kb on - strand, within Dshi_0660 at 664.450 kb on - strand, within Dshi_0660 at 664.474 kb on + strand, within Dshi_0660 at 664.727 kb on + strand, within Dshi_0660 at 664.916 kb on - strand, within Dshi_0660 at 665.294 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM remove 661,991 - Dshi_0658 0.51 +0.8 662,026 + Dshi_0658 0.53 +2.8 662,103 + Dshi_0658 0.58 +0.6 662,104 - Dshi_0658 0.58 +1.1 662,172 + Dshi_0658 0.63 +1.3 662,214 - Dshi_0658 0.65 +2.2 662,261 - Dshi_0658 0.68 +1.2 662,273 + Dshi_0658 0.69 +1.4 662,311 + Dshi_0658 0.71 +1.5 662,319 - Dshi_0658 0.72 +2.0 662,348 - Dshi_0658 0.74 +2.3 662,352 + Dshi_0658 0.74 +1.2 662,509 - Dshi_0658 0.84 +2.2 662,590 + Dshi_0658 0.89 +0.4 662,590 + Dshi_0658 0.89 +2.2 662,591 + Dshi_0658 0.89 +2.0 662,613 + +1.8 662,613 + +1.2 662,613 + +1.8 662,614 + +1.8 662,637 + +1.4 662,845 + +0.4 663,037 + +0.2 663,099 - Dshi_0659 0.11 -0.3 663,112 - Dshi_0659 0.12 -1.4 663,116 + Dshi_0659 0.12 +0.9 663,122 - Dshi_0659 0.13 -2.3 663,246 - Dshi_0659 0.22 -0.0 663,301 + Dshi_0659 0.26 -0.6 663,311 - Dshi_0659 0.27 -0.3 663,312 + Dshi_0659 0.27 -0.2 663,375 - Dshi_0659 0.31 +1.2 663,508 + Dshi_0659 0.41 +0.3 663,516 - Dshi_0659 0.42 +0.5 663,520 + Dshi_0659 0.42 -1.1 663,530 + Dshi_0659 0.43 -0.9 663,818 + Dshi_0659 0.64 -0.4 663,840 + Dshi_0659 0.65 -0.0 663,855 + Dshi_0659 0.67 +0.1 663,875 + Dshi_0659 0.68 +0.6 664,090 - Dshi_0659 0.84 +0.1 664,095 - Dshi_0659 0.84 +1.0 664,209 + +0.0 664,234 + +0.4 664,324 - -0.0 664,338 - -0.4 664,349 - +0.8 664,439 - Dshi_0660 0.10 +1.2 664,442 + Dshi_0660 0.11 -0.4 664,450 - Dshi_0660 0.12 +0.7 664,450 - Dshi_0660 0.12 -0.6 664,450 - Dshi_0660 0.12 +0.4 664,474 + Dshi_0660 0.15 +0.3 664,727 + Dshi_0660 0.49 +0.6 664,916 - Dshi_0660 0.74 +0.6 665,294 + +1.0
Or see this region's nucleotide sequence