Experiment: m.b. nitrite 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0656 and Dshi_0657 are separated by 1 nucleotides Dshi_0657 and Dshi_0658 overlap by 4 nucleotides
Dshi_0656: Dshi_0656 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 658,895 to 659,992
_0656
Dshi_0657: Dshi_0657 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 659,994 to 661,172
_0657
Dshi_0658: Dshi_0658 - ABC transporter related (RefSeq), at 661,169 to 662,770
_0658
Position (kb) 659
660
661
662 Strain fitness (log2 ratio) -1
0
1
2
3 at 659.025 kb on - strand, within Dshi_0656 at 659.087 kb on + strand, within Dshi_0656 at 659.095 kb on - strand, within Dshi_0656 at 659.123 kb on + strand, within Dshi_0656 at 659.124 kb on + strand, within Dshi_0656 at 659.132 kb on - strand, within Dshi_0656 at 659.132 kb on - strand, within Dshi_0656 at 659.254 kb on + strand, within Dshi_0656 at 659.310 kb on + strand, within Dshi_0656 at 659.310 kb on + strand, within Dshi_0656 at 659.331 kb on + strand, within Dshi_0656 at 659.343 kb on - strand, within Dshi_0656 at 659.369 kb on + strand, within Dshi_0656 at 659.400 kb on + strand, within Dshi_0656 at 659.486 kb on + strand, within Dshi_0656 at 659.593 kb on - strand, within Dshi_0656 at 659.608 kb on - strand, within Dshi_0656 at 659.623 kb on - strand, within Dshi_0656 at 659.684 kb on + strand, within Dshi_0656 at 659.711 kb on + strand, within Dshi_0656 at 659.711 kb on + strand, within Dshi_0656 at 659.778 kb on - strand, within Dshi_0656 at 659.820 kb on + strand, within Dshi_0656 at 659.820 kb on + strand, within Dshi_0656 at 659.847 kb on - strand, within Dshi_0656 at 659.944 kb on - strand at 659.949 kb on - strand at 660.010 kb on - strand at 660.011 kb on + strand at 660.014 kb on - strand at 660.316 kb on + strand, within Dshi_0657 at 660.334 kb on + strand, within Dshi_0657 at 660.342 kb on - strand, within Dshi_0657 at 660.368 kb on + strand, within Dshi_0657 at 660.416 kb on + strand, within Dshi_0657 at 660.433 kb on - strand, within Dshi_0657 at 660.633 kb on + strand, within Dshi_0657 at 660.756 kb on - strand, within Dshi_0657 at 660.772 kb on - strand, within Dshi_0657 at 660.792 kb on + strand, within Dshi_0657 at 660.792 kb on + strand, within Dshi_0657 at 660.792 kb on + strand, within Dshi_0657 at 660.810 kb on - strand, within Dshi_0657 at 660.900 kb on + strand, within Dshi_0657 at 661.235 kb on - strand at 661.254 kb on + strand at 661.254 kb on + strand at 661.368 kb on - strand, within Dshi_0658 at 661.394 kb on - strand, within Dshi_0658 at 661.521 kb on + strand, within Dshi_0658 at 661.673 kb on - strand, within Dshi_0658 at 661.811 kb on - strand, within Dshi_0658 at 661.811 kb on - strand, within Dshi_0658 at 661.853 kb on - strand, within Dshi_0658 at 661.886 kb on + strand, within Dshi_0658 at 661.991 kb on - strand, within Dshi_0658 at 662.026 kb on + strand, within Dshi_0658 at 662.103 kb on + strand, within Dshi_0658 at 662.104 kb on - strand, within Dshi_0658 at 662.172 kb on + strand, within Dshi_0658
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM remove 659,025 - Dshi_0656 0.12 +1.1 659,087 + Dshi_0656 0.17 +1.5 659,095 - Dshi_0656 0.18 +1.4 659,123 + Dshi_0656 0.21 +1.1 659,124 + Dshi_0656 0.21 +1.9 659,132 - Dshi_0656 0.22 +0.9 659,132 - Dshi_0656 0.22 +1.8 659,254 + Dshi_0656 0.33 +2.1 659,310 + Dshi_0656 0.38 +1.3 659,310 + Dshi_0656 0.38 +1.6 659,331 + Dshi_0656 0.40 +1.0 659,343 - Dshi_0656 0.41 +2.7 659,369 + Dshi_0656 0.43 +1.2 659,400 + Dshi_0656 0.46 +1.3 659,486 + Dshi_0656 0.54 +2.3 659,593 - Dshi_0656 0.64 +1.3 659,608 - Dshi_0656 0.65 +0.8 659,623 - Dshi_0656 0.66 +1.2 659,684 + Dshi_0656 0.72 +1.7 659,711 + Dshi_0656 0.74 +1.7 659,711 + Dshi_0656 0.74 +1.8 659,778 - Dshi_0656 0.80 +1.1 659,820 + Dshi_0656 0.84 +1.0 659,820 + Dshi_0656 0.84 +1.4 659,847 - Dshi_0656 0.87 +1.6 659,944 - +2.0 659,949 - +1.9 660,010 - +0.9 660,011 + +1.5 660,014 - +1.2 660,316 + Dshi_0657 0.27 +2.1 660,334 + Dshi_0657 0.29 +2.0 660,342 - Dshi_0657 0.30 +1.0 660,368 + Dshi_0657 0.32 +1.2 660,416 + Dshi_0657 0.36 +1.8 660,433 - Dshi_0657 0.37 +0.9 660,633 + Dshi_0657 0.54 +1.2 660,756 - Dshi_0657 0.65 +0.8 660,772 - Dshi_0657 0.66 +1.2 660,792 + Dshi_0657 0.68 +1.7 660,792 + Dshi_0657 0.68 +1.3 660,792 + Dshi_0657 0.68 +1.3 660,810 - Dshi_0657 0.69 +1.8 660,900 + Dshi_0657 0.77 +2.1 661,235 - +1.9 661,254 + +1.3 661,254 + +1.4 661,368 - Dshi_0658 0.12 +0.6 661,394 - Dshi_0658 0.14 +1.0 661,521 + Dshi_0658 0.22 +1.8 661,673 - Dshi_0658 0.31 +1.5 661,811 - Dshi_0658 0.40 +3.0 661,811 - Dshi_0658 0.40 +1.0 661,853 - Dshi_0658 0.43 +1.9 661,886 + Dshi_0658 0.45 +1.7 661,991 - Dshi_0658 0.51 +0.8 662,026 + Dshi_0658 0.53 +2.8 662,103 + Dshi_0658 0.58 +0.6 662,104 - Dshi_0658 0.58 +1.1 662,172 + Dshi_0658 0.63 +1.3
Or see this region's nucleotide sequence