Experiment: m.b. nitrite 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0367 and Dshi_0368 overlap by 4 nucleotides Dshi_0368 and Dshi_0369 are separated by 17 nucleotides Dshi_0369 and Dshi_0370 overlap by 1 nucleotides Dshi_0370 and Dshi_0371 are separated by 18 nucleotides
Dshi_0367: Dshi_0367 - amine oxidase (RefSeq), at 350,649 to 351,953
_0367
Dshi_0368: Dshi_0368 - protein of unknown function DUF1365 (RefSeq), at 351,950 to 352,708
_0368
Dshi_0369: Dshi_0369 - sodium:galactoside symporter family protein, putative (RefSeq), at 352,726 to 353,964
_0369
Dshi_0370: Dshi_0370 - hypothetical protein (RefSeq), at 353,964 to 354,554
_0370
Dshi_0371: Dshi_0371 - short-chain dehydrogenase/reductase SDR (RefSeq), at 354,573 to 355,304
_0371
Position (kb) 352
353
354 Strain fitness (log2 ratio) -2
-1
0
1 at 351.768 kb on + strand, within Dshi_0367 at 351.876 kb on + strand at 351.884 kb on - strand at 351.894 kb on - strand at 351.992 kb on + strand at 352.139 kb on + strand, within Dshi_0368 at 352.263 kb on + strand, within Dshi_0368 at 352.271 kb on - strand, within Dshi_0368 at 352.400 kb on - strand, within Dshi_0368 at 352.454 kb on - strand, within Dshi_0368 at 352.454 kb on - strand, within Dshi_0368 at 352.509 kb on - strand, within Dshi_0368 at 352.570 kb on + strand, within Dshi_0368 at 352.653 kb on - strand at 352.674 kb on + strand at 352.706 kb on - strand at 352.833 kb on + strand at 352.833 kb on + strand at 352.835 kb on + strand at 352.849 kb on - strand at 353.049 kb on - strand, within Dshi_0369 at 353.050 kb on - strand, within Dshi_0369 at 353.054 kb on - strand, within Dshi_0369 at 353.137 kb on - strand, within Dshi_0369 at 353.233 kb on + strand, within Dshi_0369 at 353.280 kb on + strand, within Dshi_0369 at 353.301 kb on + strand, within Dshi_0369 at 353.336 kb on - strand, within Dshi_0369 at 353.402 kb on - strand, within Dshi_0369 at 353.407 kb on - strand, within Dshi_0369 at 353.523 kb on + strand, within Dshi_0369 at 353.524 kb on + strand, within Dshi_0369 at 353.532 kb on - strand, within Dshi_0369 at 353.611 kb on + strand, within Dshi_0369 at 353.683 kb on + strand, within Dshi_0369 at 353.785 kb on - strand, within Dshi_0369 at 353.825 kb on - strand, within Dshi_0369 at 353.825 kb on - strand, within Dshi_0369 at 353.842 kb on + strand at 353.855 kb on + strand at 353.872 kb on + strand at 353.893 kb on + strand at 353.937 kb on - strand at 354.022 kb on - strand at 354.064 kb on - strand, within Dshi_0370 at 354.135 kb on + strand, within Dshi_0370 at 354.154 kb on + strand, within Dshi_0370 at 354.290 kb on + strand, within Dshi_0370 at 354.383 kb on + strand, within Dshi_0370 at 354.424 kb on + strand, within Dshi_0370 at 354.426 kb on - strand, within Dshi_0370 at 354.489 kb on + strand, within Dshi_0370 at 354.502 kb on - strand at 354.517 kb on - strand at 354.571 kb on - strand at 354.618 kb on - strand at 354.645 kb on + strand at 354.694 kb on - strand, within Dshi_0371 at 354.711 kb on + strand, within Dshi_0371 at 354.731 kb on + strand, within Dshi_0371 at 354.769 kb on + strand, within Dshi_0371 at 354.803 kb on - strand, within Dshi_0371 at 354.926 kb on + strand, within Dshi_0371 at 354.940 kb on - strand, within Dshi_0371
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM remove 351,768 + Dshi_0367 0.86 -1.5 351,876 + +1.4 351,884 - -0.8 351,894 - +0.4 351,992 + +0.5 352,139 + Dshi_0368 0.25 -0.8 352,263 + Dshi_0368 0.41 +0.3 352,271 - Dshi_0368 0.42 +1.5 352,400 - Dshi_0368 0.59 +0.7 352,454 - Dshi_0368 0.66 +0.7 352,454 - Dshi_0368 0.66 +1.2 352,509 - Dshi_0368 0.74 +1.6 352,570 + Dshi_0368 0.82 +0.2 352,653 - +1.2 352,674 + +1.4 352,706 - +0.6 352,833 + +0.3 352,833 + +0.9 352,835 + +0.0 352,849 - -0.8 353,049 - Dshi_0369 0.26 -0.2 353,050 - Dshi_0369 0.26 +0.6 353,054 - Dshi_0369 0.26 -2.5 353,137 - Dshi_0369 0.33 -1.4 353,233 + Dshi_0369 0.41 -0.7 353,280 + Dshi_0369 0.45 +1.7 353,301 + Dshi_0369 0.46 +0.3 353,336 - Dshi_0369 0.49 +0.2 353,402 - Dshi_0369 0.55 +1.6 353,407 - Dshi_0369 0.55 +0.5 353,523 + Dshi_0369 0.64 -0.9 353,524 + Dshi_0369 0.64 -0.1 353,532 - Dshi_0369 0.65 -0.1 353,611 + Dshi_0369 0.71 +0.6 353,683 + Dshi_0369 0.77 +0.8 353,785 - Dshi_0369 0.85 +0.3 353,825 - Dshi_0369 0.89 -0.0 353,825 - Dshi_0369 0.89 -1.2 353,842 + -0.1 353,855 + +0.6 353,872 + +1.1 353,893 + +1.0 353,937 - +0.6 354,022 - -0.8 354,064 - Dshi_0370 0.17 -0.2 354,135 + Dshi_0370 0.29 +0.1 354,154 + Dshi_0370 0.32 +0.2 354,290 + Dshi_0370 0.55 +0.8 354,383 + Dshi_0370 0.71 -0.6 354,424 + Dshi_0370 0.78 +1.2 354,426 - Dshi_0370 0.78 -0.6 354,489 + Dshi_0370 0.89 -0.4 354,502 - +1.1 354,517 - +0.2 354,571 - +1.1 354,618 - -0.5 354,645 + +1.2 354,694 - Dshi_0371 0.17 +0.9 354,711 + Dshi_0371 0.19 +0.3 354,731 + Dshi_0371 0.22 +1.2 354,769 + Dshi_0371 0.27 -0.8 354,803 - Dshi_0371 0.31 -0.4 354,926 + Dshi_0371 0.48 +0.1 354,940 - Dshi_0371 0.50 -0.2
Or see this region's nucleotide sequence