Experiment: m.b. nitrite 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0291 and Dshi_0292 are separated by 51 nucleotides Dshi_0292 and Dshi_0293 are separated by 87 nucleotides Dshi_0293 and Dshi_0294 are separated by 12 nucleotides Dshi_0294 and Dshi_0295 are separated by 73 nucleotides Dshi_0295 and Dshi_0296 overlap by 1 nucleotides
Dshi_0291: Dshi_0291 - hypothetical protein (RefSeq), at 289,020 to 289,409
_0291
Dshi_0292: Dshi_0292 - hypothetical protein (RefSeq), at 289,461 to 290,186
_0292
Dshi_0293: Dshi_0293 - ribosomal protein L29 (RefSeq), at 290,274 to 290,480
_0293
Dshi_0294: Dshi_0294 - ribosomal protein S17 (RefSeq), at 290,493 to 290,723
_0294
Dshi_0295: Dshi_0295 - ribosomal protein L14 (RefSeq), at 290,797 to 291,165
_0295
Dshi_0296: Dshi_0296 - ribosomal protein L24 (RefSeq), at 291,165 to 291,470
_0296
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 288.471 kb on - strand at 288.475 kb on + strand at 288.475 kb on + strand at 288.520 kb on - strand at 288.522 kb on + strand at 288.527 kb on + strand at 288.529 kb on + strand at 288.529 kb on - strand at 288.536 kb on + strand at 288.542 kb on + strand at 288.542 kb on + strand at 288.548 kb on + strand at 288.561 kb on - strand at 288.569 kb on + strand at 288.582 kb on + strand at 288.582 kb on + strand at 288.590 kb on - strand at 288.590 kb on - strand at 288.607 kb on - strand at 288.631 kb on + strand at 288.631 kb on + strand at 288.631 kb on + strand at 288.646 kb on + strand at 288.646 kb on + strand at 288.646 kb on + strand at 288.657 kb on + strand at 288.661 kb on + strand at 288.662 kb on - strand at 288.665 kb on - strand at 288.665 kb on - strand at 288.668 kb on + strand at 288.668 kb on + strand at 288.673 kb on + strand at 288.676 kb on - strand at 288.676 kb on - strand at 288.676 kb on - strand at 288.676 kb on - strand at 288.725 kb on + strand at 288.725 kb on + strand at 288.725 kb on + strand at 288.725 kb on + strand at 288.733 kb on - strand at 288.733 kb on - strand at 288.794 kb on - strand at 288.818 kb on + strand at 288.818 kb on + strand at 288.818 kb on + strand at 288.823 kb on + strand at 288.826 kb on - strand at 288.826 kb on - strand at 288.826 kb on - strand at 288.826 kb on - strand at 288.828 kb on + strand at 288.828 kb on + strand at 288.828 kb on + strand at 288.828 kb on + strand at 288.828 kb on + strand at 288.828 kb on + strand at 288.828 kb on + strand at 288.833 kb on + strand at 288.836 kb on - strand at 288.836 kb on - strand at 288.836 kb on - strand at 288.836 kb on - strand at 288.836 kb on - strand at 288.837 kb on + strand at 288.838 kb on + strand at 288.838 kb on + strand at 288.846 kb on - strand at 288.846 kb on - strand at 288.846 kb on - strand at 288.851 kb on - strand at 288.862 kb on + strand at 288.870 kb on + strand at 288.870 kb on + strand at 288.870 kb on - strand at 288.870 kb on - strand at 288.877 kb on - strand at 288.909 kb on + strand at 288.909 kb on + strand at 288.915 kb on - strand at 288.950 kb on + strand at 289.000 kb on - strand at 289.001 kb on - strand at 289.003 kb on + strand at 289.003 kb on + strand at 289.003 kb on + strand at 289.003 kb on + strand at 289.011 kb on - strand at 289.011 kb on - strand at 289.011 kb on - strand at 289.011 kb on - strand at 289.011 kb on - strand at 289.015 kb on + strand at 289.017 kb on + strand at 289.017 kb on + strand at 289.023 kb on - strand at 289.025 kb on - strand at 289.057 kb on + strand at 289.071 kb on + strand, within Dshi_0291 at 289.071 kb on + strand, within Dshi_0291 at 289.074 kb on - strand, within Dshi_0291 at 289.079 kb on + strand, within Dshi_0291 at 289.079 kb on + strand, within Dshi_0291 at 289.087 kb on + strand, within Dshi_0291 at 289.095 kb on - strand, within Dshi_0291 at 289.095 kb on - strand, within Dshi_0291 at 289.137 kb on + strand, within Dshi_0291 at 289.140 kb on - strand, within Dshi_0291 at 289.140 kb on - strand, within Dshi_0291 at 289.145 kb on - strand, within Dshi_0291 at 289.166 kb on + strand, within Dshi_0291 at 289.169 kb on - strand, within Dshi_0291 at 289.176 kb on + strand, within Dshi_0291 at 289.179 kb on - strand, within Dshi_0291 at 289.196 kb on + strand, within Dshi_0291 at 289.204 kb on - strand, within Dshi_0291 at 289.216 kb on - strand, within Dshi_0291 at 289.295 kb on - strand, within Dshi_0291 at 289.335 kb on - strand, within Dshi_0291 at 289.379 kb on - strand at 289.394 kb on + strand at 289.438 kb on + strand at 289.471 kb on - strand at 289.523 kb on + strand at 289.548 kb on - strand, within Dshi_0292 at 289.580 kb on + strand, within Dshi_0292 at 289.580 kb on + strand, within Dshi_0292 at 289.609 kb on + strand, within Dshi_0292 at 289.645 kb on + strand, within Dshi_0292 at 289.653 kb on - strand, within Dshi_0292 at 289.687 kb on - strand, within Dshi_0292 at 289.700 kb on - strand, within Dshi_0292 at 289.890 kb on - strand, within Dshi_0292 at 289.895 kb on - strand, within Dshi_0292 at 289.937 kb on + strand, within Dshi_0292 at 289.942 kb on + strand, within Dshi_0292 at 290.006 kb on + strand, within Dshi_0292 at 290.006 kb on + strand, within Dshi_0292 at 290.006 kb on + strand, within Dshi_0292 at 290.018 kb on + strand, within Dshi_0292 at 290.041 kb on + strand, within Dshi_0292 at 290.041 kb on + strand, within Dshi_0292 at 290.041 kb on + strand, within Dshi_0292
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM remove 288,471 - +1.1 288,475 + +0.0 288,475 + +0.0 288,520 - +0.3 288,522 + +0.0 288,527 + +0.2 288,529 + +0.1 288,529 - +0.1 288,536 + -0.7 288,542 + -0.5 288,542 + -0.0 288,548 + +0.3 288,561 - -0.9 288,569 + +1.1 288,582 + +0.2 288,582 + +1.0 288,590 - -1.8 288,590 - +0.0 288,607 - +0.6 288,631 + +0.0 288,631 + +1.5 288,631 + +0.1 288,646 + +1.8 288,646 + +0.5 288,646 + +1.0 288,657 + +0.2 288,661 + -0.4 288,662 - +0.0 288,665 - +0.4 288,665 - +0.6 288,668 + -0.6 288,668 + +0.2 288,673 + +0.3 288,676 - +0.9 288,676 - +0.8 288,676 - +0.4 288,676 - +0.1 288,725 + +0.3 288,725 + -0.5 288,725 + +0.5 288,725 + +1.7 288,733 - +0.8 288,733 - +0.5 288,794 - +0.3 288,818 + +1.0 288,818 + +0.5 288,818 + -0.5 288,823 + -0.6 288,826 - -0.5 288,826 - -0.0 288,826 - -0.1 288,826 - -1.1 288,828 + +0.9 288,828 + +0.5 288,828 + -0.9 288,828 + +0.9 288,828 + -1.1 288,828 + +1.2 288,828 + -0.1 288,833 + +0.2 288,836 - +0.3 288,836 - +1.0 288,836 - -1.3 288,836 - +0.9 288,836 - +0.4 288,837 + +0.2 288,838 + +0.3 288,838 + -1.1 288,846 - +0.7 288,846 - +0.2 288,846 - -0.2 288,851 - +0.5 288,862 + -1.4 288,870 + +0.6 288,870 + +0.5 288,870 - -0.5 288,870 - +0.5 288,877 - +0.8 288,909 + +0.4 288,909 + +0.0 288,915 - -1.0 288,950 + +0.8 289,000 - +0.1 289,001 - -0.3 289,003 + +0.1 289,003 + +1.6 289,003 + +0.2 289,003 + +0.6 289,011 - -1.3 289,011 - -1.8 289,011 - +0.1 289,011 - -0.4 289,011 - +0.4 289,015 + -1.1 289,017 + -0.2 289,017 + +0.6 289,023 - +0.1 289,025 - +0.4 289,057 + -0.7 289,071 + Dshi_0291 0.13 +0.3 289,071 + Dshi_0291 0.13 +0.7 289,074 - Dshi_0291 0.14 -0.2 289,079 + Dshi_0291 0.15 -0.2 289,079 + Dshi_0291 0.15 +1.0 289,087 + Dshi_0291 0.17 +0.4 289,095 - Dshi_0291 0.19 +2.8 289,095 - Dshi_0291 0.19 -0.7 289,137 + Dshi_0291 0.30 +0.0 289,140 - Dshi_0291 0.31 +0.1 289,140 - Dshi_0291 0.31 +1.2 289,145 - Dshi_0291 0.32 -0.3 289,166 + Dshi_0291 0.37 -1.2 289,169 - Dshi_0291 0.38 +0.4 289,176 + Dshi_0291 0.40 -0.1 289,179 - Dshi_0291 0.41 +0.4 289,196 + Dshi_0291 0.45 +0.2 289,204 - Dshi_0291 0.47 +0.4 289,216 - Dshi_0291 0.50 -0.2 289,295 - Dshi_0291 0.71 +0.3 289,335 - Dshi_0291 0.81 +0.4 289,379 - +0.9 289,394 + +0.2 289,438 + +0.6 289,471 - +0.4 289,523 + -0.3 289,548 - Dshi_0292 0.12 +0.6 289,580 + Dshi_0292 0.16 +0.6 289,580 + Dshi_0292 0.16 +0.2 289,609 + Dshi_0292 0.20 +0.6 289,645 + Dshi_0292 0.25 +1.5 289,653 - Dshi_0292 0.26 +0.7 289,687 - Dshi_0292 0.31 +0.2 289,700 - Dshi_0292 0.33 +1.5 289,890 - Dshi_0292 0.59 +1.5 289,895 - Dshi_0292 0.60 +2.5 289,937 + Dshi_0292 0.66 +0.6 289,942 + Dshi_0292 0.66 +0.5 290,006 + Dshi_0292 0.75 +1.7 290,006 + Dshi_0292 0.75 +0.8 290,006 + Dshi_0292 0.75 -1.9 290,018 + Dshi_0292 0.77 +0.8 290,041 + Dshi_0292 0.80 +0.7 290,041 + Dshi_0292 0.80 +0.6 290,041 + Dshi_0292 0.80 -1.2
Or see this region's nucleotide sequence