Experiment: m.b. nitrite 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0213 and Dshi_0214 are separated by 122 nucleotides Dshi_0214 and Dshi_0215 are separated by 160 nucleotides
Dshi_0213: Dshi_0213 - Phosphoenolpyruvate carboxykinase (ATP) (RefSeq), at 210,410 to 212,008
_0213
Dshi_0214: Dshi_0214 - 3-hydroxybutyryl-CoA dehydrogenase (RefSeq), at 212,131 to 213,006
_0214
Dshi_0215: Dshi_0215 - hypothetical protein (RefSeq), at 213,167 to 214,024
_0215
Position (kb) 212
213
214 Strain fitness (log2 ratio) -2
-1
0
1
2 at 211.276 kb on - strand, within Dshi_0213 at 211.565 kb on - strand, within Dshi_0213 at 211.613 kb on + strand, within Dshi_0213 at 211.897 kb on - strand at 211.930 kb on + strand at 211.968 kb on - strand at 211.992 kb on - strand at 211.993 kb on + strand at 212.020 kb on + strand at 212.119 kb on - strand at 212.127 kb on - strand at 212.388 kb on - strand, within Dshi_0214 at 212.416 kb on + strand, within Dshi_0214 at 212.602 kb on - strand, within Dshi_0214 at 212.767 kb on - strand, within Dshi_0214 at 212.778 kb on + strand, within Dshi_0214 at 212.778 kb on + strand, within Dshi_0214 at 212.886 kb on + strand, within Dshi_0214 at 212.894 kb on - strand, within Dshi_0214 at 212.920 kb on - strand at 212.922 kb on + strand at 212.929 kb on + strand at 212.929 kb on + strand at 212.929 kb on + strand at 213.003 kb on - strand at 213.012 kb on + strand at 213.013 kb on + strand at 213.020 kb on - strand at 213.034 kb on + strand at 213.035 kb on + strand at 213.135 kb on + strand at 213.179 kb on + strand at 213.187 kb on - strand at 213.246 kb on - strand at 213.254 kb on - strand, within Dshi_0215 at 213.259 kb on - strand, within Dshi_0215 at 213.268 kb on - strand, within Dshi_0215 at 213.272 kb on + strand, within Dshi_0215 at 213.344 kb on - strand, within Dshi_0215 at 213.346 kb on + strand, within Dshi_0215 at 213.353 kb on + strand, within Dshi_0215 at 213.361 kb on - strand, within Dshi_0215 at 213.413 kb on - strand, within Dshi_0215 at 213.449 kb on - strand, within Dshi_0215 at 213.535 kb on - strand, within Dshi_0215 at 213.561 kb on + strand, within Dshi_0215 at 213.684 kb on - strand, within Dshi_0215 at 213.696 kb on + strand, within Dshi_0215 at 213.978 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM remove 211,276 - Dshi_0213 0.54 -0.6 211,565 - Dshi_0213 0.72 -0.7 211,613 + Dshi_0213 0.75 -0.3 211,897 - -1.9 211,930 + -1.5 211,968 - -2.0 211,992 - -0.0 211,993 + -0.1 212,020 + +0.2 212,119 - -1.9 212,127 - +1.8 212,388 - Dshi_0214 0.29 -0.4 212,416 + Dshi_0214 0.33 -0.1 212,602 - Dshi_0214 0.54 +1.6 212,767 - Dshi_0214 0.73 +0.8 212,778 + Dshi_0214 0.74 -0.6 212,778 + Dshi_0214 0.74 -0.0 212,886 + Dshi_0214 0.86 -1.4 212,894 - Dshi_0214 0.87 -0.3 212,920 - -0.4 212,922 + -0.7 212,929 + -0.1 212,929 + -0.3 212,929 + -1.3 213,003 - -0.8 213,012 + -1.5 213,013 + -0.4 213,020 - +0.4 213,034 + +0.6 213,035 + -0.6 213,135 + +0.7 213,179 + +0.3 213,187 - -2.5 213,246 - +0.6 213,254 - Dshi_0215 0.10 +0.6 213,259 - Dshi_0215 0.11 +0.1 213,268 - Dshi_0215 0.12 +0.2 213,272 + Dshi_0215 0.12 -1.4 213,344 - Dshi_0215 0.21 +0.9 213,346 + Dshi_0215 0.21 -0.2 213,353 + Dshi_0215 0.22 -0.6 213,361 - Dshi_0215 0.23 +0.5 213,413 - Dshi_0215 0.29 -0.7 213,449 - Dshi_0215 0.33 -0.1 213,535 - Dshi_0215 0.43 +0.4 213,561 + Dshi_0215 0.46 -0.2 213,684 - Dshi_0215 0.60 -1.2 213,696 + Dshi_0215 0.62 +0.2 213,978 + -1.0
Or see this region's nucleotide sequence