Experiment: m.b. nitrite 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0130 and Dshi_0131 are separated by 65 nucleotides Dshi_0131 and Dshi_0132 are separated by 4 nucleotides
Dshi_0130: Dshi_0130 - Abortive infection protein (RefSeq), at 128,795 to 129,697
_0130
Dshi_0131: Dshi_0131 - acetyl-CoA carboxylase, carboxyl transferase, beta subunit (RefSeq), at 129,763 to 130,725
_0131
Dshi_0132: Dshi_0132 - FolC bifunctional protein (RefSeq), at 130,730 to 131,998
_0132
Position (kb) 129
130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 128.779 kb on + strand at 128.854 kb on + strand at 128.872 kb on - strand at 128.889 kb on - strand, within Dshi_0130 at 128.897 kb on - strand, within Dshi_0130 at 128.899 kb on - strand, within Dshi_0130 at 128.980 kb on - strand, within Dshi_0130 at 128.980 kb on - strand, within Dshi_0130 at 129.005 kb on - strand, within Dshi_0130 at 129.036 kb on + strand, within Dshi_0130 at 129.077 kb on - strand, within Dshi_0130 at 129.149 kb on + strand, within Dshi_0130 at 129.158 kb on + strand, within Dshi_0130 at 129.208 kb on - strand, within Dshi_0130 at 129.260 kb on + strand, within Dshi_0130 at 129.262 kb on + strand, within Dshi_0130 at 129.361 kb on - strand, within Dshi_0130 at 129.430 kb on - strand, within Dshi_0130 at 129.442 kb on - strand, within Dshi_0130 at 129.574 kb on - strand at 129.676 kb on + strand at 129.691 kb on - strand at 130.714 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 0.6 mM remove 128,779 + -2.3 128,854 + +0.3 128,872 - +0.3 128,889 - Dshi_0130 0.10 +0.1 128,897 - Dshi_0130 0.11 -0.4 128,899 - Dshi_0130 0.12 -0.2 128,980 - Dshi_0130 0.20 +0.2 128,980 - Dshi_0130 0.20 +0.4 129,005 - Dshi_0130 0.23 +1.9 129,036 + Dshi_0130 0.27 +0.3 129,077 - Dshi_0130 0.31 +0.2 129,149 + Dshi_0130 0.39 +0.1 129,158 + Dshi_0130 0.40 -2.8 129,208 - Dshi_0130 0.46 +1.8 129,260 + Dshi_0130 0.51 +1.9 129,262 + Dshi_0130 0.52 -1.6 129,361 - Dshi_0130 0.63 +1.4 129,430 - Dshi_0130 0.70 -0.4 129,442 - Dshi_0130 0.72 +0.3 129,574 - +0.2 129,676 + -1.2 129,691 - -1.0 130,714 + -3.0
Or see this region's nucleotide sequence