Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2584

Experiment: MoYLS4 with DETA/NO 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2583 and corA are separated by 461 nucleotidescorA and DVU2585 are separated by 238 nucleotides DVU2583: DVU2583 - lipoprotein, putative (TIGR), at 2,704,465 to 2,704,971 DVU2583 DVU2584: corA - transporter, CorA family (TIGR), at 2,705,433 to 2,706,365 corA DVU2585: DVU2585 - methyl-accepting chemotaxis protein (TIGR), at 2,706,604 to 2,708,484 DVU2585 Position (kb) 2705 2706 2707Strain fitness (log2 ratio) -1 0 1at 2704.434 kb on - strandat 2704.434 kb on - strandat 2704.444 kb on - strandat 2704.465 kb on - strandat 2704.622 kb on - strand, within DVU2583at 2704.667 kb on + strand, within DVU2583at 2704.731 kb on + strand, within DVU2583at 2704.771 kb on - strand, within DVU2583at 2704.771 kb on - strand, within DVU2583at 2704.849 kb on + strand, within DVU2583at 2704.944 kb on + strandat 2704.973 kb on - strandat 2704.978 kb on + strandat 2704.986 kb on - strandat 2705.050 kb on + strandat 2705.106 kb on - strandat 2705.176 kb on + strandat 2705.204 kb on - strandat 2705.285 kb on + strandat 2705.357 kb on + strandat 2705.383 kb on + strandat 2705.404 kb on - strandat 2705.643 kb on - strand, within corAat 2705.643 kb on - strand, within corAat 2705.676 kb on + strand, within corAat 2705.767 kb on - strand, within corAat 2705.791 kb on + strand, within corAat 2705.792 kb on - strand, within corAat 2705.799 kb on - strand, within corAat 2705.799 kb on - strand, within corAat 2705.857 kb on + strand, within corAat 2705.857 kb on + strand, within corAat 2705.857 kb on - strand, within corAat 2705.865 kb on - strand, within corAat 2705.934 kb on - strand, within corAat 2705.934 kb on - strand, within corAat 2705.945 kb on + strand, within corAat 2705.945 kb on + strand, within corAat 2705.945 kb on + strand, within corAat 2705.953 kb on - strand, within corAat 2706.198 kb on + strand, within corAat 2706.285 kb on + strandat 2706.285 kb on + strandat 2706.293 kb on - strandat 2706.348 kb on + strandat 2706.384 kb on - strandat 2706.423 kb on - strandat 2706.444 kb on - strandat 2706.465 kb on - strandat 2706.465 kb on - strandat 2706.497 kb on - strandat 2706.502 kb on - strandat 2706.512 kb on + strandat 2706.520 kb on - strandat 2706.619 kb on + strandat 2706.682 kb on - strandat 2706.682 kb on - strandat 2706.721 kb on - strandat 2706.757 kb on - strandat 2706.792 kb on - strand, within DVU2585at 2706.879 kb on - strand, within DVU2585at 2706.950 kb on + strand, within DVU2585at 2707.003 kb on + strand, within DVU2585at 2707.003 kb on + strand, within DVU2585at 2707.003 kb on + strand, within DVU2585at 2707.003 kb on + strand, within DVU2585at 2707.003 kb on + strand, within DVU2585at 2707.003 kb on + strand, within DVU2585at 2707.011 kb on - strand, within DVU2585at 2707.011 kb on - strand, within DVU2585at 2707.011 kb on - strand, within DVU2585at 2707.011 kb on - strand, within DVU2585at 2707.011 kb on - strand, within DVU2585at 2707.011 kb on - strand, within DVU2585at 2707.011 kb on - strand, within DVU2585at 2707.021 kb on - strand, within DVU2585at 2707.048 kb on - strand, within DVU2585at 2707.110 kb on - strand, within DVU2585at 2707.141 kb on - strand, within DVU2585at 2707.152 kb on + strand, within DVU2585at 2707.160 kb on - strand, within DVU2585at 2707.186 kb on - strand, within DVU2585at 2707.203 kb on + strand, within DVU2585at 2707.230 kb on + strand, within DVU2585at 2707.251 kb on + strand, within DVU2585at 2707.257 kb on - strand, within DVU2585at 2707.275 kb on + strand, within DVU2585at 2707.301 kb on + strand, within DVU2585

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DETA/NO 100uM
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2,704,434 - -0.2
2,704,434 - +0.1
2,704,444 - +0.8
2,704,465 - -0.0
2,704,622 - DVU2583 0.31 -0.3
2,704,667 + DVU2583 0.40 -0.6
2,704,731 + DVU2583 0.52 -0.1
2,704,771 - DVU2583 0.60 -0.6
2,704,771 - DVU2583 0.60 -0.4
2,704,849 + DVU2583 0.76 -0.3
2,704,944 + -0.7
2,704,973 - -0.2
2,704,978 + -0.1
2,704,986 - -0.3
2,705,050 + -0.6
2,705,106 - -0.1
2,705,176 + +0.4
2,705,204 - +0.1
2,705,285 + +1.2
2,705,357 + -0.2
2,705,383 + +0.0
2,705,404 - +1.3
2,705,643 - corA DVU2584 0.23 -0.3
2,705,643 - corA DVU2584 0.23 -0.6
2,705,676 + corA DVU2584 0.26 +0.1
2,705,767 - corA DVU2584 0.36 -0.1
2,705,791 + corA DVU2584 0.38 -0.1
2,705,792 - corA DVU2584 0.38 -0.1
2,705,799 - corA DVU2584 0.39 -0.2
2,705,799 - corA DVU2584 0.39 -0.3
2,705,857 + corA DVU2584 0.45 -0.9
2,705,857 + corA DVU2584 0.45 -0.3
2,705,857 - corA DVU2584 0.45 -0.5
2,705,865 - corA DVU2584 0.46 -0.7
2,705,934 - corA DVU2584 0.54 -1.7
2,705,934 - corA DVU2584 0.54 -0.1
2,705,945 + corA DVU2584 0.55 -0.7
2,705,945 + corA DVU2584 0.55 -0.3
2,705,945 + corA DVU2584 0.55 +0.7
2,705,953 - corA DVU2584 0.56 -0.7
2,706,198 + corA DVU2584 0.82 -0.6
2,706,285 + -0.2
2,706,285 + -0.6
2,706,293 - -0.3
2,706,348 + -0.7
2,706,384 - -0.3
2,706,423 - +0.5
2,706,444 - -0.1
2,706,465 - +0.0
2,706,465 - -0.1
2,706,497 - +1.1
2,706,502 - +0.6
2,706,512 + -0.7
2,706,520 - +0.8
2,706,619 + -0.6
2,706,682 - +0.4
2,706,682 - -0.9
2,706,721 - +0.9
2,706,757 - -0.2
2,706,792 - DVU2585 0.10 -0.6
2,706,879 - DVU2585 0.15 +0.6
2,706,950 + DVU2585 0.18 -0.6
2,707,003 + DVU2585 0.21 +0.0
2,707,003 + DVU2585 0.21 -0.1
2,707,003 + DVU2585 0.21 +0.4
2,707,003 + DVU2585 0.21 -0.5
2,707,003 + DVU2585 0.21 -0.9
2,707,003 + DVU2585 0.21 -0.0
2,707,011 - DVU2585 0.22 -0.2
2,707,011 - DVU2585 0.22 +0.2
2,707,011 - DVU2585 0.22 -1.4
2,707,011 - DVU2585 0.22 -0.3
2,707,011 - DVU2585 0.22 -0.8
2,707,011 - DVU2585 0.22 -0.1
2,707,011 - DVU2585 0.22 +0.1
2,707,021 - DVU2585 0.22 -0.1
2,707,048 - DVU2585 0.24 -0.0
2,707,110 - DVU2585 0.27 -0.2
2,707,141 - DVU2585 0.29 +0.8
2,707,152 + DVU2585 0.29 +0.1
2,707,160 - DVU2585 0.30 -0.0
2,707,186 - DVU2585 0.31 +0.1
2,707,203 + DVU2585 0.32 -1.3
2,707,230 + DVU2585 0.33 +0.7
2,707,251 + DVU2585 0.34 +0.3
2,707,257 - DVU2585 0.35 +0.2
2,707,275 + DVU2585 0.36 -0.1
2,707,301 + DVU2585 0.37 +0.2

Or see this region's nucleotide sequence