Experiment: MoYLS4 with DETA/NO 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2583 and corA are separated by 461 nucleotides corA and DVU2585 are separated by 238 nucleotides
DVU2583: DVU2583 - lipoprotein, putative (TIGR), at 2,704,465 to 2,704,971
DVU2583
DVU2584: corA - transporter, CorA family (TIGR), at 2,705,433 to 2,706,365
corA
DVU2585: DVU2585 - methyl-accepting chemotaxis protein (TIGR), at 2,706,604 to 2,708,484
DVU2585
Position (kb)
2705
2706
2707 Strain fitness (log2 ratio)
-1
0
1 at 2704.434 kb on - strand at 2704.434 kb on - strand at 2704.444 kb on - strand at 2704.465 kb on - strand at 2704.622 kb on - strand, within DVU2583 at 2704.667 kb on + strand, within DVU2583 at 2704.731 kb on + strand, within DVU2583 at 2704.771 kb on - strand, within DVU2583 at 2704.771 kb on - strand, within DVU2583 at 2704.849 kb on + strand, within DVU2583 at 2704.944 kb on + strand at 2704.973 kb on - strand at 2704.978 kb on + strand at 2704.986 kb on - strand at 2705.050 kb on + strand at 2705.106 kb on - strand at 2705.176 kb on + strand at 2705.204 kb on - strand at 2705.285 kb on + strand at 2705.357 kb on + strand at 2705.383 kb on + strand at 2705.404 kb on - strand at 2705.643 kb on - strand, within corA at 2705.643 kb on - strand, within corA at 2705.676 kb on + strand, within corA at 2705.767 kb on - strand, within corA at 2705.791 kb on + strand, within corA at 2705.792 kb on - strand, within corA at 2705.799 kb on - strand, within corA at 2705.799 kb on - strand, within corA at 2705.857 kb on + strand, within corA at 2705.857 kb on + strand, within corA at 2705.857 kb on - strand, within corA at 2705.865 kb on - strand, within corA at 2705.934 kb on - strand, within corA at 2705.934 kb on - strand, within corA at 2705.945 kb on + strand, within corA at 2705.945 kb on + strand, within corA at 2705.945 kb on + strand, within corA at 2705.953 kb on - strand, within corA at 2706.198 kb on + strand, within corA at 2706.285 kb on + strand at 2706.285 kb on + strand at 2706.293 kb on - strand at 2706.348 kb on + strand at 2706.384 kb on - strand at 2706.423 kb on - strand at 2706.444 kb on - strand at 2706.465 kb on - strand at 2706.465 kb on - strand at 2706.497 kb on - strand at 2706.502 kb on - strand at 2706.512 kb on + strand at 2706.520 kb on - strand at 2706.619 kb on + strand at 2706.682 kb on - strand at 2706.682 kb on - strand at 2706.721 kb on - strand at 2706.757 kb on - strand at 2706.792 kb on - strand, within DVU2585 at 2706.879 kb on - strand, within DVU2585 at 2706.950 kb on + strand, within DVU2585 at 2707.003 kb on + strand, within DVU2585 at 2707.003 kb on + strand, within DVU2585 at 2707.003 kb on + strand, within DVU2585 at 2707.003 kb on + strand, within DVU2585 at 2707.003 kb on + strand, within DVU2585 at 2707.003 kb on + strand, within DVU2585 at 2707.011 kb on - strand, within DVU2585 at 2707.011 kb on - strand, within DVU2585 at 2707.011 kb on - strand, within DVU2585 at 2707.011 kb on - strand, within DVU2585 at 2707.011 kb on - strand, within DVU2585 at 2707.011 kb on - strand, within DVU2585 at 2707.011 kb on - strand, within DVU2585 at 2707.021 kb on - strand, within DVU2585 at 2707.048 kb on - strand, within DVU2585 at 2707.110 kb on - strand, within DVU2585 at 2707.141 kb on - strand, within DVU2585 at 2707.152 kb on + strand, within DVU2585 at 2707.160 kb on - strand, within DVU2585 at 2707.186 kb on - strand, within DVU2585 at 2707.203 kb on + strand, within DVU2585 at 2707.230 kb on + strand, within DVU2585 at 2707.251 kb on + strand, within DVU2585 at 2707.257 kb on - strand, within DVU2585 at 2707.275 kb on + strand, within DVU2585 at 2707.301 kb on + strand, within DVU2585
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DETA/NO 100uM remove 2,704,434 - -0.2 2,704,434 - +0.1 2,704,444 - +0.8 2,704,465 - -0.0 2,704,622 - DVU2583 0.31 -0.3 2,704,667 + DVU2583 0.40 -0.6 2,704,731 + DVU2583 0.52 -0.1 2,704,771 - DVU2583 0.60 -0.6 2,704,771 - DVU2583 0.60 -0.4 2,704,849 + DVU2583 0.76 -0.3 2,704,944 + -0.7 2,704,973 - -0.2 2,704,978 + -0.1 2,704,986 - -0.3 2,705,050 + -0.6 2,705,106 - -0.1 2,705,176 + +0.4 2,705,204 - +0.1 2,705,285 + +1.2 2,705,357 + -0.2 2,705,383 + +0.0 2,705,404 - +1.3 2,705,643 - corA DVU2584 0.23 -0.3 2,705,643 - corA DVU2584 0.23 -0.6 2,705,676 + corA DVU2584 0.26 +0.1 2,705,767 - corA DVU2584 0.36 -0.1 2,705,791 + corA DVU2584 0.38 -0.1 2,705,792 - corA DVU2584 0.38 -0.1 2,705,799 - corA DVU2584 0.39 -0.2 2,705,799 - corA DVU2584 0.39 -0.3 2,705,857 + corA DVU2584 0.45 -0.9 2,705,857 + corA DVU2584 0.45 -0.3 2,705,857 - corA DVU2584 0.45 -0.5 2,705,865 - corA DVU2584 0.46 -0.7 2,705,934 - corA DVU2584 0.54 -1.7 2,705,934 - corA DVU2584 0.54 -0.1 2,705,945 + corA DVU2584 0.55 -0.7 2,705,945 + corA DVU2584 0.55 -0.3 2,705,945 + corA DVU2584 0.55 +0.7 2,705,953 - corA DVU2584 0.56 -0.7 2,706,198 + corA DVU2584 0.82 -0.6 2,706,285 + -0.2 2,706,285 + -0.6 2,706,293 - -0.3 2,706,348 + -0.7 2,706,384 - -0.3 2,706,423 - +0.5 2,706,444 - -0.1 2,706,465 - +0.0 2,706,465 - -0.1 2,706,497 - +1.1 2,706,502 - +0.6 2,706,512 + -0.7 2,706,520 - +0.8 2,706,619 + -0.6 2,706,682 - +0.4 2,706,682 - -0.9 2,706,721 - +0.9 2,706,757 - -0.2 2,706,792 - DVU2585 0.10 -0.6 2,706,879 - DVU2585 0.15 +0.6 2,706,950 + DVU2585 0.18 -0.6 2,707,003 + DVU2585 0.21 +0.0 2,707,003 + DVU2585 0.21 -0.1 2,707,003 + DVU2585 0.21 +0.4 2,707,003 + DVU2585 0.21 -0.5 2,707,003 + DVU2585 0.21 -0.9 2,707,003 + DVU2585 0.21 -0.0 2,707,011 - DVU2585 0.22 -0.2 2,707,011 - DVU2585 0.22 +0.2 2,707,011 - DVU2585 0.22 -1.4 2,707,011 - DVU2585 0.22 -0.3 2,707,011 - DVU2585 0.22 -0.8 2,707,011 - DVU2585 0.22 -0.1 2,707,011 - DVU2585 0.22 +0.1 2,707,021 - DVU2585 0.22 -0.1 2,707,048 - DVU2585 0.24 -0.0 2,707,110 - DVU2585 0.27 -0.2 2,707,141 - DVU2585 0.29 +0.8 2,707,152 + DVU2585 0.29 +0.1 2,707,160 - DVU2585 0.30 -0.0 2,707,186 - DVU2585 0.31 +0.1 2,707,203 + DVU2585 0.32 -1.3 2,707,230 + DVU2585 0.33 +0.7 2,707,251 + DVU2585 0.34 +0.3 2,707,257 - DVU2585 0.35 +0.2 2,707,275 + DVU2585 0.36 -0.1 2,707,301 + DVU2585 0.37 +0.2
Or see this region's nucleotide sequence