Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2995

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2994 and Rru_A2995 overlap by 4 nucleotidesRru_A2995 and Rru_A2996 are separated by 126 nucleotides Rru_A2994: Rru_A2994 - hypothetical protein (NCBI), at 3,446,838 to 3,448,145 _A2994 Rru_A2995: Rru_A2995 - hypothetical protein (NCBI), at 3,448,142 to 3,448,555 _A2995 Rru_A2996: Rru_A2996 - Cobalamin (vitamin B12) biosynthesis CbiD protein (NCBI), at 3,448,682 to 3,449,755 _A2996 Position (kb) 3448 3449Strain fitness (log2 ratio) -2 -1 0 1at 3447.406 kb on - strand, within Rru_A2994at 3447.445 kb on - strand, within Rru_A2994at 3447.503 kb on - strand, within Rru_A2994at 3447.503 kb on - strand, within Rru_A2994at 3447.550 kb on - strand, within Rru_A2994at 3448.011 kb on - strand, within Rru_A2994at 3448.089 kb on - strandat 3448.217 kb on - strand, within Rru_A2995at 3448.218 kb on + strand, within Rru_A2995at 3448.218 kb on + strand, within Rru_A2995at 3448.218 kb on + strand, within Rru_A2995at 3448.219 kb on - strand, within Rru_A2995at 3448.248 kb on + strand, within Rru_A2995at 3448.248 kb on + strand, within Rru_A2995at 3448.248 kb on + strand, within Rru_A2995at 3448.249 kb on - strand, within Rru_A2995at 3448.259 kb on + strand, within Rru_A2995at 3448.260 kb on - strand, within Rru_A2995at 3448.260 kb on - strand, within Rru_A2995at 3448.261 kb on + strand, within Rru_A2995at 3448.262 kb on - strand, within Rru_A2995at 3448.302 kb on + strand, within Rru_A2995at 3448.302 kb on + strand, within Rru_A2995at 3448.302 kb on + strand, within Rru_A2995at 3448.303 kb on - strand, within Rru_A2995at 3448.303 kb on - strand, within Rru_A2995at 3448.303 kb on - strand, within Rru_A2995at 3448.303 kb on - strand, within Rru_A2995at 3448.303 kb on - strand, within Rru_A2995at 3448.303 kb on - strand, within Rru_A2995at 3448.333 kb on - strand, within Rru_A2995at 3448.341 kb on + strand, within Rru_A2995at 3448.363 kb on + strand, within Rru_A2995at 3448.363 kb on + strand, within Rru_A2995at 3448.363 kb on + strand, within Rru_A2995at 3448.364 kb on - strand, within Rru_A2995at 3448.364 kb on - strand, within Rru_A2995at 3448.364 kb on - strand, within Rru_A2995at 3448.591 kb on + strandat 3448.596 kb on + strandat 3448.662 kb on + strandat 3448.663 kb on - strandat 3449.005 kb on + strand, within Rru_A2996at 3449.005 kb on + strand, within Rru_A2996at 3449.005 kb on + strand, within Rru_A2996at 3449.005 kb on + strand, within Rru_A2996at 3449.005 kb on + strand, within Rru_A2996at 3449.005 kb on + strand, within Rru_A2996at 3449.005 kb on + strand, within Rru_A2996at 3449.005 kb on + strand, within Rru_A2996at 3449.005 kb on + strand, within Rru_A2996at 3449.005 kb on + strand, within Rru_A2996at 3449.005 kb on + strand, within Rru_A2996at 3449.005 kb on + strand, within Rru_A2996at 3449.006 kb on - strand, within Rru_A2996at 3449.006 kb on - strand, within Rru_A2996at 3449.006 kb on - strand, within Rru_A2996at 3449.035 kb on - strand, within Rru_A2996at 3449.267 kb on + strand, within Rru_A2996

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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3,447,406 - Rru_A2994 0.43 -2.1
3,447,445 - Rru_A2994 0.46 -2.0
3,447,503 - Rru_A2994 0.51 -0.6
3,447,503 - Rru_A2994 0.51 +0.0
3,447,550 - Rru_A2994 0.54 -1.2
3,448,011 - Rru_A2994 0.90 +0.0
3,448,089 - +0.0
3,448,217 - Rru_A2995 0.18 +0.0
3,448,218 + Rru_A2995 0.18 -1.3
3,448,218 + Rru_A2995 0.18 +0.0
3,448,218 + Rru_A2995 0.18 +0.0
3,448,219 - Rru_A2995 0.19 +0.0
3,448,248 + Rru_A2995 0.26 +0.0
3,448,248 + Rru_A2995 0.26 -1.6
3,448,248 + Rru_A2995 0.26 +0.0
3,448,249 - Rru_A2995 0.26 -1.8
3,448,259 + Rru_A2995 0.28 +0.0
3,448,260 - Rru_A2995 0.29 +0.0
3,448,260 - Rru_A2995 0.29 +0.0
3,448,261 + Rru_A2995 0.29 -1.1
3,448,262 - Rru_A2995 0.29 +0.0
3,448,302 + Rru_A2995 0.39 -1.4
3,448,302 + Rru_A2995 0.39 +0.0
3,448,302 + Rru_A2995 0.39 +0.0
3,448,303 - Rru_A2995 0.39 +0.0
3,448,303 - Rru_A2995 0.39 -2.0
3,448,303 - Rru_A2995 0.39 +0.0
3,448,303 - Rru_A2995 0.39 +0.0
3,448,303 - Rru_A2995 0.39 +0.0
3,448,303 - Rru_A2995 0.39 +0.0
3,448,333 - Rru_A2995 0.46 +0.0
3,448,341 + Rru_A2995 0.48 +0.0
3,448,363 + Rru_A2995 0.53 -1.6
3,448,363 + Rru_A2995 0.53 -1.5
3,448,363 + Rru_A2995 0.53 -2.6
3,448,364 - Rru_A2995 0.54 -1.2
3,448,364 - Rru_A2995 0.54 -1.3
3,448,364 - Rru_A2995 0.54 +0.0
3,448,591 + +0.0
3,448,596 + +0.0
3,448,662 + -1.6
3,448,663 - +0.0
3,449,005 + Rru_A2996 0.30 -1.4
3,449,005 + Rru_A2996 0.30 +0.0
3,449,005 + Rru_A2996 0.30 -1.9
3,449,005 + Rru_A2996 0.30 +0.0
3,449,005 + Rru_A2996 0.30 -1.2
3,449,005 + Rru_A2996 0.30 -1.7
3,449,005 + Rru_A2996 0.30 +0.0
3,449,005 + Rru_A2996 0.30 -0.8
3,449,005 + Rru_A2996 0.30 +0.0
3,449,005 + Rru_A2996 0.30 -1.6
3,449,005 + Rru_A2996 0.30 +0.0
3,449,005 + Rru_A2996 0.30 +0.0
3,449,006 - Rru_A2996 0.30 +0.0
3,449,006 - Rru_A2996 0.30 +0.0
3,449,006 - Rru_A2996 0.30 +0.0
3,449,035 - Rru_A2996 0.33 +0.0
3,449,267 + Rru_A2996 0.54 -1.8

Or see this region's nucleotide sequence