Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2838

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2836 and Rru_A2837 are separated by 284 nucleotidesRru_A2837 and Rru_A2838 are separated by 167 nucleotidesRru_A2838 and Rru_A2839 are separated by 18 nucleotidesRru_A2839 and Rru_A2840 overlap by 4 nucleotides Rru_A2836: Rru_A2836 - hypothetical protein (NCBI), at 3,268,273 to 3,269,052 _A2836 Rru_A2837: Rru_A2837 - Response regulator receiver domain protein (CheY) (NCBI), at 3,269,337 to 3,269,726 _A2837 Rru_A2838: Rru_A2838 - hypothetical protein (NCBI), at 3,269,894 to 3,270,610 _A2838 Rru_A2839: Rru_A2839 - hypothetical protein (NCBI), at 3,270,629 to 3,271,381 _A2839 Rru_A2840: Rru_A2840 - flagellar motor switch protein FliM (NCBI), at 3,271,378 to 3,272,532 _A2840 Position (kb) 3269 3270 3271Strain fitness (log2 ratio) -3 -2 -1 0 1at 3269.032 kb on + strandat 3269.032 kb on + strandat 3269.243 kb on - strandat 3269.339 kb on - strandat 3269.628 kb on - strand, within Rru_A2837at 3269.667 kb on - strand, within Rru_A2837at 3269.682 kb on - strand, within Rru_A2837at 3269.709 kb on - strandat 3269.790 kb on + strandat 3269.835 kb on + strandat 3269.835 kb on + strandat 3269.836 kb on - strandat 3269.836 kb on - strandat 3269.839 kb on + strandat 3269.840 kb on - strandat 3269.854 kb on + strandat 3269.854 kb on + strandat 3269.854 kb on + strandat 3269.854 kb on + strandat 3269.854 kb on + strandat 3269.855 kb on - strandat 3269.856 kb on + strandat 3269.856 kb on + strandat 3269.856 kb on + strandat 3269.857 kb on - strandat 3269.969 kb on - strand, within Rru_A2838at 3270.052 kb on + strand, within Rru_A2838at 3270.094 kb on + strand, within Rru_A2838at 3270.095 kb on - strand, within Rru_A2838at 3270.095 kb on - strand, within Rru_A2838at 3270.096 kb on + strand, within Rru_A2838at 3270.097 kb on - strand, within Rru_A2838at 3270.097 kb on - strand, within Rru_A2838at 3270.100 kb on + strand, within Rru_A2838at 3270.140 kb on - strand, within Rru_A2838at 3270.140 kb on - strand, within Rru_A2838at 3270.140 kb on - strand, within Rru_A2838at 3270.185 kb on - strand, within Rru_A2838at 3270.610 kb on + strandat 3270.611 kb on - strandat 3270.611 kb on - strandat 3270.611 kb on - strandat 3270.611 kb on - strandat 3270.611 kb on - strandat 3270.611 kb on - strandat 3270.611 kb on - strandat 3270.923 kb on + strand, within Rru_A2839at 3271.114 kb on + strand, within Rru_A2839at 3271.114 kb on + strand, within Rru_A2839at 3271.115 kb on - strand, within Rru_A2839at 3271.115 kb on - strand, within Rru_A2839at 3271.116 kb on + strand, within Rru_A2839at 3271.116 kb on + strand, within Rru_A2839at 3271.116 kb on + strand, within Rru_A2839at 3271.116 kb on + strand, within Rru_A2839at 3271.116 kb on + strand, within Rru_A2839at 3271.117 kb on - strand, within Rru_A2839at 3271.117 kb on - strand, within Rru_A2839at 3271.273 kb on + strand, within Rru_A2839at 3271.273 kb on + strand, within Rru_A2839at 3271.395 kb on + strandat 3271.559 kb on + strand, within Rru_A2840at 3271.559 kb on + strand, within Rru_A2840at 3271.559 kb on + strand, within Rru_A2840at 3271.560 kb on - strand, within Rru_A2840at 3271.560 kb on - strand, within Rru_A2840at 3271.560 kb on - strand, within Rru_A2840at 3271.560 kb on - strand, within Rru_A2840

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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3,269,032 + +0.0
3,269,032 + +0.0
3,269,243 - +0.0
3,269,339 - +0.0
3,269,628 - Rru_A2837 0.75 -1.5
3,269,667 - Rru_A2837 0.85 -1.0
3,269,682 - Rru_A2837 0.88 +0.0
3,269,709 - +0.0
3,269,790 + +0.0
3,269,835 + +0.0
3,269,835 + +0.0
3,269,836 - +0.0
3,269,836 - +0.0
3,269,839 + -1.0
3,269,840 - +0.0
3,269,854 + +0.0
3,269,854 + -1.0
3,269,854 + -1.9
3,269,854 + +0.0
3,269,854 + +0.0
3,269,855 - +0.0
3,269,856 + +0.0
3,269,856 + -1.6
3,269,856 + +0.0
3,269,857 - -2.3
3,269,969 - Rru_A2838 0.10 -2.9
3,270,052 + Rru_A2838 0.22 -1.0
3,270,094 + Rru_A2838 0.28 +0.0
3,270,095 - Rru_A2838 0.28 +0.0
3,270,095 - Rru_A2838 0.28 +0.0
3,270,096 + Rru_A2838 0.28 -1.6
3,270,097 - Rru_A2838 0.28 +0.0
3,270,097 - Rru_A2838 0.28 +0.0
3,270,100 + Rru_A2838 0.29 +0.0
3,270,140 - Rru_A2838 0.34 +0.0
3,270,140 - Rru_A2838 0.34 +0.0
3,270,140 - Rru_A2838 0.34 -0.7
3,270,185 - Rru_A2838 0.41 +0.0
3,270,610 + +0.0
3,270,611 - +0.0
3,270,611 - +0.0
3,270,611 - -1.7
3,270,611 - +0.0
3,270,611 - +1.6
3,270,611 - +0.0
3,270,611 - +0.0
3,270,923 + Rru_A2839 0.39 +0.0
3,271,114 + Rru_A2839 0.64 +0.0
3,271,114 + Rru_A2839 0.64 +0.0
3,271,115 - Rru_A2839 0.65 +0.0
3,271,115 - Rru_A2839 0.65 -1.0
3,271,116 + Rru_A2839 0.65 +0.0
3,271,116 + Rru_A2839 0.65 -1.5
3,271,116 + Rru_A2839 0.65 +0.0
3,271,116 + Rru_A2839 0.65 -2.4
3,271,116 + Rru_A2839 0.65 -1.0
3,271,117 - Rru_A2839 0.65 +0.0
3,271,117 - Rru_A2839 0.65 +0.0
3,271,273 + Rru_A2839 0.86 +0.0
3,271,273 + Rru_A2839 0.86 +0.0
3,271,395 + +0.0
3,271,559 + Rru_A2840 0.16 +0.0
3,271,559 + Rru_A2840 0.16 -1.2
3,271,559 + Rru_A2840 0.16 +0.0
3,271,560 - Rru_A2840 0.16 -1.0
3,271,560 - Rru_A2840 0.16 +0.0
3,271,560 - Rru_A2840 0.16 +0.0
3,271,560 - Rru_A2840 0.16 +0.0

Or see this region's nucleotide sequence