Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1724 and Rru_A1725 are separated by 38 nucleotides Rru_A1725 and Rru_A1726 are separated by 117 nucleotides Rru_A1726 and Rru_A1727 are separated by 4 nucleotides Rru_A1727 and Rru_A1728 are separated by 164 nucleotides
Rru_A1724: Rru_A1724 - ThiJ/PfpI (NCBI), at 2,017,171 to 2,017,848
_A1724
Rru_A1725: Rru_A1725 - Carbonate dehydratase (NCBI), at 2,017,887 to 2,018,666
_A1725
Rru_A1726: Rru_A1726 - Transcription-repair coupling factor (NCBI), at 2,018,784 to 2,022,317
_A1726
Rru_A1727: Rru_A1727 - Protein of unknown function DUF339 (NCBI), at 2,022,322 to 2,022,588
_A1727
Rru_A1728: Rru_A1728 - ATP-dependent DNA helicase RecG (NCBI), at 2,022,753 to 2,024,864
_A1728
Position (kb)
2018
2019
2020
2021
2022
2023 Strain fitness (log2 ratio)
-2
-1
0
1 at 2017.847 kb on - strand at 2018.062 kb on + strand, within Rru_A1725 at 2018.062 kb on + strand, within Rru_A1725 at 2018.062 kb on + strand, within Rru_A1725 at 2018.062 kb on + strand, within Rru_A1725 at 2018.062 kb on + strand, within Rru_A1725 at 2018.062 kb on + strand, within Rru_A1725 at 2018.062 kb on + strand, within Rru_A1725 at 2018.062 kb on + strand, within Rru_A1725 at 2018.062 kb on + strand, within Rru_A1725 at 2018.063 kb on - strand, within Rru_A1725 at 2018.063 kb on - strand, within Rru_A1725 at 2018.063 kb on - strand, within Rru_A1725 at 2018.063 kb on - strand, within Rru_A1725 at 2018.063 kb on - strand, within Rru_A1725 at 2018.063 kb on - strand, within Rru_A1725 at 2018.063 kb on - strand, within Rru_A1725 at 2018.063 kb on - strand, within Rru_A1725 at 2018.063 kb on - strand, within Rru_A1725 at 2018.071 kb on + strand, within Rru_A1725 at 2018.072 kb on - strand, within Rru_A1725 at 2018.308 kb on + strand, within Rru_A1725 at 2018.309 kb on - strand, within Rru_A1725 at 2018.309 kb on - strand, within Rru_A1725 at 2018.323 kb on + strand, within Rru_A1725 at 2018.324 kb on - strand, within Rru_A1725 at 2018.361 kb on + strand, within Rru_A1725 at 2018.362 kb on - strand, within Rru_A1725 at 2018.378 kb on + strand, within Rru_A1725 at 2018.379 kb on - strand, within Rru_A1725 at 2018.379 kb on - strand, within Rru_A1725 at 2018.388 kb on - strand, within Rru_A1725 at 2018.388 kb on - strand, within Rru_A1725 at 2018.417 kb on - strand, within Rru_A1725 at 2018.503 kb on + strand, within Rru_A1725 at 2018.503 kb on + strand, within Rru_A1725 at 2018.503 kb on + strand, within Rru_A1725 at 2018.504 kb on - strand, within Rru_A1725 at 2018.504 kb on - strand, within Rru_A1725 at 2018.504 kb on - strand, within Rru_A1725 at 2018.504 kb on - strand, within Rru_A1725 at 2018.551 kb on + strand, within Rru_A1725 at 2018.552 kb on - strand, within Rru_A1725 at 2018.552 kb on - strand, within Rru_A1725 at 2018.552 kb on - strand, within Rru_A1725 at 2018.667 kb on + strand at 2018.668 kb on - strand at 2019.166 kb on + strand, within Rru_A1726 at 2019.199 kb on + strand, within Rru_A1726 at 2019.199 kb on + strand, within Rru_A1726 at 2019.319 kb on + strand, within Rru_A1726 at 2019.320 kb on - strand, within Rru_A1726 at 2019.320 kb on - strand, within Rru_A1726 at 2019.344 kb on + strand, within Rru_A1726 at 2019.389 kb on + strand, within Rru_A1726 at 2019.447 kb on + strand, within Rru_A1726 at 2019.447 kb on + strand, within Rru_A1726 at 2019.447 kb on + strand, within Rru_A1726 at 2019.447 kb on + strand, within Rru_A1726 at 2019.447 kb on + strand, within Rru_A1726 at 2019.447 kb on + strand, within Rru_A1726 at 2019.447 kb on + strand, within Rru_A1726 at 2019.448 kb on - strand, within Rru_A1726 at 2019.448 kb on - strand, within Rru_A1726 at 2019.448 kb on - strand, within Rru_A1726 at 2019.448 kb on - strand, within Rru_A1726 at 2019.448 kb on - strand, within Rru_A1726 at 2019.448 kb on - strand, within Rru_A1726 at 2019.448 kb on - strand, within Rru_A1726 at 2019.505 kb on + strand, within Rru_A1726 at 2019.505 kb on + strand, within Rru_A1726 at 2019.505 kb on + strand, within Rru_A1726 at 2019.506 kb on - strand, within Rru_A1726 at 2019.506 kb on - strand, within Rru_A1726 at 2019.512 kb on - strand, within Rru_A1726 at 2019.512 kb on - strand, within Rru_A1726 at 2019.512 kb on - strand, within Rru_A1726 at 2019.512 kb on - strand, within Rru_A1726 at 2019.553 kb on + strand, within Rru_A1726 at 2019.554 kb on - strand, within Rru_A1726 at 2019.576 kb on - strand, within Rru_A1726 at 2019.600 kb on - strand, within Rru_A1726 at 2019.600 kb on - strand, within Rru_A1726 at 2019.600 kb on - strand, within Rru_A1726 at 2019.659 kb on - strand, within Rru_A1726 at 2019.659 kb on - strand, within Rru_A1726 at 2019.659 kb on - strand, within Rru_A1726 at 2019.659 kb on - strand, within Rru_A1726 at 2019.802 kb on + strand, within Rru_A1726 at 2019.802 kb on + strand, within Rru_A1726 at 2019.802 kb on + strand, within Rru_A1726 at 2019.802 kb on + strand, within Rru_A1726 at 2019.802 kb on + strand, within Rru_A1726 at 2019.802 kb on + strand, within Rru_A1726 at 2019.802 kb on + strand, within Rru_A1726 at 2019.802 kb on + strand, within Rru_A1726 at 2019.803 kb on - strand, within Rru_A1726 at 2019.803 kb on - strand, within Rru_A1726 at 2019.803 kb on - strand, within Rru_A1726 at 2019.803 kb on - strand, within Rru_A1726 at 2019.803 kb on - strand, within Rru_A1726 at 2019.803 kb on - strand, within Rru_A1726 at 2020.474 kb on + strand, within Rru_A1726 at 2020.474 kb on + strand, within Rru_A1726 at 2020.554 kb on - strand, within Rru_A1726 at 2020.646 kb on - strand, within Rru_A1726 at 2020.664 kb on + strand, within Rru_A1726 at 2020.664 kb on + strand, within Rru_A1726 at 2020.681 kb on + strand, within Rru_A1726 at 2020.681 kb on + strand, within Rru_A1726 at 2020.681 kb on + strand, within Rru_A1726 at 2020.682 kb on - strand, within Rru_A1726 at 2020.682 kb on - strand, within Rru_A1726 at 2020.682 kb on - strand, within Rru_A1726 at 2020.682 kb on - strand, within Rru_A1726 at 2020.682 kb on - strand, within Rru_A1726 at 2020.702 kb on + strand, within Rru_A1726 at 2020.763 kb on - strand, within Rru_A1726 at 2020.763 kb on - strand, within Rru_A1726 at 2021.239 kb on + strand, within Rru_A1726 at 2021.240 kb on - strand, within Rru_A1726 at 2021.329 kb on + strand, within Rru_A1726 at 2021.329 kb on + strand, within Rru_A1726 at 2021.329 kb on + strand, within Rru_A1726 at 2021.329 kb on + strand, within Rru_A1726 at 2021.485 kb on + strand, within Rru_A1726 at 2021.486 kb on - strand, within Rru_A1726 at 2021.486 kb on - strand, within Rru_A1726 at 2021.486 kb on - strand, within Rru_A1726 at 2021.499 kb on - strand, within Rru_A1726 at 2021.572 kb on + strand, within Rru_A1726 at 2021.572 kb on + strand, within Rru_A1726 at 2021.572 kb on + strand, within Rru_A1726 at 2021.572 kb on + strand, within Rru_A1726 at 2021.573 kb on - strand, within Rru_A1726 at 2021.573 kb on - strand, within Rru_A1726 at 2021.796 kb on - strand, within Rru_A1726 at 2021.822 kb on - strand, within Rru_A1726 at 2021.857 kb on + strand, within Rru_A1726 at 2021.857 kb on + strand, within Rru_A1726 at 2021.858 kb on - strand, within Rru_A1726 at 2022.088 kb on + strand at 2022.089 kb on - strand at 2022.089 kb on - strand at 2022.654 kb on + strand at 2022.654 kb on + strand at 2022.654 kb on + strand at 2022.654 kb on + strand at 2022.654 kb on + strand at 2022.654 kb on + strand at 2022.655 kb on - strand at 2022.655 kb on - strand at 2022.655 kb on - strand at 2022.656 kb on + strand at 2022.656 kb on + strand at 2022.656 kb on + strand at 2022.656 kb on + strand at 2022.657 kb on - strand at 2022.657 kb on - strand at 2022.657 kb on - strand at 2022.657 kb on - strand at 2022.657 kb on - strand at 2022.658 kb on + strand at 2022.658 kb on + strand at 2022.658 kb on + strand at 2022.658 kb on + strand at 2022.659 kb on - strand at 2022.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 2,017,847 - -0.1 2,018,062 + Rru_A1725 0.22 -0.1 2,018,062 + Rru_A1725 0.22 -0.1 2,018,062 + Rru_A1725 0.22 -1.1 2,018,062 + Rru_A1725 0.22 -1.3 2,018,062 + Rru_A1725 0.22 -1.1 2,018,062 + Rru_A1725 0.22 -1.8 2,018,062 + Rru_A1725 0.22 -0.1 2,018,062 + Rru_A1725 0.22 -1.3 2,018,062 + Rru_A1725 0.22 -0.9 2,018,063 - Rru_A1725 0.23 -0.1 2,018,063 - Rru_A1725 0.23 -0.1 2,018,063 - Rru_A1725 0.23 -0.1 2,018,063 - Rru_A1725 0.23 -1.0 2,018,063 - Rru_A1725 0.23 -0.1 2,018,063 - Rru_A1725 0.23 -1.1 2,018,063 - Rru_A1725 0.23 -1.5 2,018,063 - Rru_A1725 0.23 -0.1 2,018,063 - Rru_A1725 0.23 -0.1 2,018,071 + Rru_A1725 0.24 -1.5 2,018,072 - Rru_A1725 0.24 -0.1 2,018,308 + Rru_A1725 0.54 -0.1 2,018,309 - Rru_A1725 0.54 -0.1 2,018,309 - Rru_A1725 0.54 -2.7 2,018,323 + Rru_A1725 0.56 -0.1 2,018,324 - Rru_A1725 0.56 -0.1 2,018,361 + Rru_A1725 0.61 -0.1 2,018,362 - Rru_A1725 0.61 -0.1 2,018,378 + Rru_A1725 0.63 -0.1 2,018,379 - Rru_A1725 0.63 -0.1 2,018,379 - Rru_A1725 0.63 -0.1 2,018,388 - Rru_A1725 0.64 -1.6 2,018,388 - Rru_A1725 0.64 -1.6 2,018,417 - Rru_A1725 0.68 -0.1 2,018,503 + Rru_A1725 0.79 -0.1 2,018,503 + Rru_A1725 0.79 -0.1 2,018,503 + Rru_A1725 0.79 -2.4 2,018,504 - Rru_A1725 0.79 -0.1 2,018,504 - Rru_A1725 0.79 -0.1 2,018,504 - Rru_A1725 0.79 -0.1 2,018,504 - Rru_A1725 0.79 -0.1 2,018,551 + Rru_A1725 0.85 -0.1 2,018,552 - Rru_A1725 0.85 -0.1 2,018,552 - Rru_A1725 0.85 -0.1 2,018,552 - Rru_A1725 0.85 -0.1 2,018,667 + -0.1 2,018,668 - -0.1 2,019,166 + Rru_A1726 0.11 -0.1 2,019,199 + Rru_A1726 0.12 -0.1 2,019,199 + Rru_A1726 0.12 -0.1 2,019,319 + Rru_A1726 0.15 -1.1 2,019,320 - Rru_A1726 0.15 -0.1 2,019,320 - Rru_A1726 0.15 -0.9 2,019,344 + Rru_A1726 0.16 -0.1 2,019,389 + Rru_A1726 0.17 -0.1 2,019,447 + Rru_A1726 0.19 -0.1 2,019,447 + Rru_A1726 0.19 -0.1 2,019,447 + Rru_A1726 0.19 -0.1 2,019,447 + Rru_A1726 0.19 +1.0 2,019,447 + Rru_A1726 0.19 -1.3 2,019,447 + Rru_A1726 0.19 -0.1 2,019,447 + Rru_A1726 0.19 -0.1 2,019,448 - Rru_A1726 0.19 -0.5 2,019,448 - Rru_A1726 0.19 -0.1 2,019,448 - Rru_A1726 0.19 -0.1 2,019,448 - Rru_A1726 0.19 -0.1 2,019,448 - Rru_A1726 0.19 -0.1 2,019,448 - Rru_A1726 0.19 -0.1 2,019,448 - Rru_A1726 0.19 -0.6 2,019,505 + Rru_A1726 0.20 -2.1 2,019,505 + Rru_A1726 0.20 -0.7 2,019,505 + Rru_A1726 0.20 -0.4 2,019,506 - Rru_A1726 0.20 -0.1 2,019,506 - Rru_A1726 0.20 -1.9 2,019,512 - Rru_A1726 0.21 -0.1 2,019,512 - Rru_A1726 0.21 -0.1 2,019,512 - Rru_A1726 0.21 -0.1 2,019,512 - Rru_A1726 0.21 -0.1 2,019,553 + Rru_A1726 0.22 -0.1 2,019,554 - Rru_A1726 0.22 -0.1 2,019,576 - Rru_A1726 0.22 -0.9 2,019,600 - Rru_A1726 0.23 -1.1 2,019,600 - Rru_A1726 0.23 -0.1 2,019,600 - Rru_A1726 0.23 -0.3 2,019,659 - Rru_A1726 0.25 -0.1 2,019,659 - Rru_A1726 0.25 -0.1 2,019,659 - Rru_A1726 0.25 -1.6 2,019,659 - Rru_A1726 0.25 -1.9 2,019,802 + Rru_A1726 0.29 -0.9 2,019,802 + Rru_A1726 0.29 -0.1 2,019,802 + Rru_A1726 0.29 -0.5 2,019,802 + Rru_A1726 0.29 +0.3 2,019,802 + Rru_A1726 0.29 +0.2 2,019,802 + Rru_A1726 0.29 -0.1 2,019,802 + Rru_A1726 0.29 -0.1 2,019,802 + Rru_A1726 0.29 -0.1 2,019,803 - Rru_A1726 0.29 -0.1 2,019,803 - Rru_A1726 0.29 -0.1 2,019,803 - Rru_A1726 0.29 -0.1 2,019,803 - Rru_A1726 0.29 -0.1 2,019,803 - Rru_A1726 0.29 -0.1 2,019,803 - Rru_A1726 0.29 -0.3 2,020,474 + Rru_A1726 0.48 -0.1 2,020,474 + Rru_A1726 0.48 -0.9 2,020,554 - Rru_A1726 0.50 -0.6 2,020,646 - Rru_A1726 0.53 -0.1 2,020,664 + Rru_A1726 0.53 -0.1 2,020,664 + Rru_A1726 0.53 -0.9 2,020,681 + Rru_A1726 0.54 -0.1 2,020,681 + Rru_A1726 0.54 -0.1 2,020,681 + Rru_A1726 0.54 -0.1 2,020,682 - Rru_A1726 0.54 -0.1 2,020,682 - Rru_A1726 0.54 -0.6 2,020,682 - Rru_A1726 0.54 -0.1 2,020,682 - Rru_A1726 0.54 -1.2 2,020,682 - Rru_A1726 0.54 -0.1 2,020,702 + Rru_A1726 0.54 -0.1 2,020,763 - Rru_A1726 0.56 -1.2 2,020,763 - Rru_A1726 0.56 -0.1 2,021,239 + Rru_A1726 0.69 -0.1 2,021,240 - Rru_A1726 0.69 -0.1 2,021,329 + Rru_A1726 0.72 -1.1 2,021,329 + Rru_A1726 0.72 -0.1 2,021,329 + Rru_A1726 0.72 -0.8 2,021,329 + Rru_A1726 0.72 -0.1 2,021,485 + Rru_A1726 0.76 -0.1 2,021,486 - Rru_A1726 0.76 -0.1 2,021,486 - Rru_A1726 0.76 -0.1 2,021,486 - Rru_A1726 0.76 -0.1 2,021,499 - Rru_A1726 0.77 -0.1 2,021,572 + Rru_A1726 0.79 -0.1 2,021,572 + Rru_A1726 0.79 -1.7 2,021,572 + Rru_A1726 0.79 -0.1 2,021,572 + Rru_A1726 0.79 -0.1 2,021,573 - Rru_A1726 0.79 -1.5 2,021,573 - Rru_A1726 0.79 -0.1 2,021,796 - Rru_A1726 0.85 -0.1 2,021,822 - Rru_A1726 0.86 -0.1 2,021,857 + Rru_A1726 0.87 -0.3 2,021,857 + Rru_A1726 0.87 -0.6 2,021,858 - Rru_A1726 0.87 -0.1 2,022,088 + -0.1 2,022,089 - -0.1 2,022,089 - -0.1 2,022,654 + -0.6 2,022,654 + -0.1 2,022,654 + -0.1 2,022,654 + -1.1 2,022,654 + -0.1 2,022,654 + +0.1 2,022,655 - -0.1 2,022,655 - -0.1 2,022,655 - -0.1 2,022,656 + -0.1 2,022,656 + -0.1 2,022,656 + -0.1 2,022,656 + -0.1 2,022,657 - -1.4 2,022,657 - -2.0 2,022,657 - -0.1 2,022,657 - -1.7 2,022,657 - -1.0 2,022,658 + -0.1 2,022,658 + -0.1 2,022,658 + -0.1 2,022,658 + -0.1 2,022,659 - -0.1 2,022,659 - -1.9
Or see this region's nucleotide sequence