Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1279

Experiment: L-Malic Acid (C) and N2; no light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic Acid (C) and N2; no light
1,504,770	+				-0.1
1,504,770	+				-0.1
1,504,771	-				-0.1
1,504,771	-				-0.1
1,504,803	-				-0.1
1,504,887	+		Rru_A1278	0.15	-0.1
1,504,887	+		Rru_A1278	0.15	-0.1
1,504,888	-		Rru_A1278	0.16	-0.3
1,505,091	+		Rru_A1278	0.40	-0.1
1,505,091	+		Rru_A1278	0.40	-0.1
1,505,092	-		Rru_A1278	0.40	-0.1
1,505,092	-		Rru_A1278	0.40	-0.1
1,505,146	+		Rru_A1278	0.47	-0.1
1,505,307	+		Rru_A1278	0.66	-0.1
1,505,315	+		Rru_A1278	0.67	-1.1
1,505,379	-		Rru_A1278	0.74	-2.6
1,505,417	-		Rru_A1278	0.79	-1.0
1,505,580	+				-0.1
1,505,581	-				-1.0
1,505,802	+		Rru_A1279	0.10	-0.1
1,505,802	+		Rru_A1279	0.10	-0.1
1,505,802	+		Rru_A1279	0.10	-0.1
1,505,802	+		Rru_A1279	0.10	-0.1
1,505,803	-		Rru_A1279	0.10	-0.1
1,505,803	-		Rru_A1279	0.10	-1.4
1,505,803	-		Rru_A1279	0.10	-0.1
1,505,803	-		Rru_A1279	0.10	-0.1
1,505,803	-		Rru_A1279	0.10	-0.1
1,505,803	-		Rru_A1279	0.10	-0.1
1,505,920	+		Rru_A1279	0.16	-0.1
1,505,994	+		Rru_A1279	0.20	-2.1
1,505,994	+		Rru_A1279	0.20	-0.8
1,506,144	+		Rru_A1279	0.28	-1.8
1,506,145	-		Rru_A1279	0.28	-0.1
1,506,145	-		Rru_A1279	0.28	-0.7
1,506,145	-		Rru_A1279	0.28	-0.1
1,506,145	-		Rru_A1279	0.28	-0.7
1,506,145	-		Rru_A1279	0.28	-0.1
1,506,145	-		Rru_A1279	0.28	-0.1
1,506,241	-		Rru_A1279	0.33	-1.8
1,506,241	-		Rru_A1279	0.33	-0.1
1,506,241	-		Rru_A1279	0.33	-0.1
1,506,241	-		Rru_A1279	0.33	-0.1
1,506,362	+		Rru_A1279	0.39	-0.1
1,506,393	+		Rru_A1279	0.41	-0.1
1,506,394	-		Rru_A1279	0.41	-0.1
1,506,394	-		Rru_A1279	0.41	-0.1
1,506,394	-		Rru_A1279	0.41	-0.1
1,506,499	+		Rru_A1279	0.46	-1.6
1,506,499	+		Rru_A1279	0.46	-0.1
1,506,500	-		Rru_A1279	0.47	-1.5
1,506,500	-		Rru_A1279	0.47	-0.1
1,506,500	-		Rru_A1279	0.47	-0.1
1,506,500	-		Rru_A1279	0.47	-0.1
1,506,500	-		Rru_A1279	0.47	-0.1
1,506,578	+		Rru_A1279	0.51	-1.1
1,506,578	+		Rru_A1279	0.51	-2.8
1,506,578	+		Rru_A1279	0.51	-0.1
1,506,578	+		Rru_A1279	0.51	-1.1
1,506,579	-		Rru_A1279	0.51	-0.1
1,506,579	-		Rru_A1279	0.51	-0.1
1,506,579	-		Rru_A1279	0.51	-1.1
1,506,579	-		Rru_A1279	0.51	-1.0
1,506,579	-		Rru_A1279	0.51	-0.1
1,506,579	-		Rru_A1279	0.51	-1.2
1,506,579	-		Rru_A1279	0.51	-0.1
1,506,579	-		Rru_A1279	0.51	-0.1
1,506,592	+		Rru_A1279	0.51	-0.9
1,506,592	+		Rru_A1279	0.51	-0.1
1,506,593	-		Rru_A1279	0.51	-0.1
1,506,655	+		Rru_A1279	0.55	-0.1
1,506,685	+		Rru_A1279	0.56	-0.7
1,506,685	+		Rru_A1279	0.56	-0.1
1,506,685	+		Rru_A1279	0.56	-0.1
1,506,685	+		Rru_A1279	0.56	-1.3
1,506,686	-		Rru_A1279	0.56	-0.1
1,506,686	-		Rru_A1279	0.56	-0.1
1,506,688	-		Rru_A1279	0.56	-1.4
1,506,730	+		Rru_A1279	0.58	-0.1
1,506,730	+		Rru_A1279	0.58	-1.5
1,506,749	+		Rru_A1279	0.59	-1.7
1,506,764	+		Rru_A1279	0.60	-0.1
1,506,764	+		Rru_A1279	0.60	-0.1
1,506,765	-		Rru_A1279	0.60	-0.1
1,506,765	-		Rru_A1279	0.60	-0.1
1,506,765	-		Rru_A1279	0.60	-0.6
1,506,840	+		Rru_A1279	0.64	-0.7
1,506,840	+		Rru_A1279	0.64	-0.1
1,506,900	+		Rru_A1279	0.67	-0.1
1,506,900	+		Rru_A1279	0.67	-1.1
1,506,900	+		Rru_A1279	0.67	-0.1
1,506,901	-		Rru_A1279	0.67	-0.1
1,506,901	-		Rru_A1279	0.67	-0.8
1,506,901	-		Rru_A1279	0.67	-0.9
1,506,901	-		Rru_A1279	0.67	-0.1
1,506,901	-		Rru_A1279	0.67	-0.1
1,506,901	-		Rru_A1279	0.67	-1.7
1,506,901	-		Rru_A1279	0.67	-0.1
1,506,901	-		Rru_A1279	0.67	-0.1
1,506,901	-		Rru_A1279	0.67	-0.1
1,506,901	-		Rru_A1279	0.67	-1.1
1,506,901	-		Rru_A1279	0.67	-0.1
1,506,901	-		Rru_A1279	0.67	-0.8
1,506,901	-		Rru_A1279	0.67	-0.1
1,506,944	+		Rru_A1279	0.70	-1.0
1,506,962	-		Rru_A1279	0.70	-0.1
1,506,962	-		Rru_A1279	0.70	-0.1
1,506,963	+		Rru_A1279	0.71	-1.2
1,506,963	+		Rru_A1279	0.71	-0.1
1,506,964	-		Rru_A1279	0.71	-1.3
1,506,964	-		Rru_A1279	0.71	-0.1
1,507,048	+		Rru_A1279	0.75	-0.1
1,507,085	+		Rru_A1279	0.77	-0.1
1,507,086	-		Rru_A1279	0.77	-0.1
1,507,086	-		Rru_A1279	0.77	-0.1
1,507,086	-		Rru_A1279	0.77	-0.1
1,507,107	+		Rru_A1279	0.78	-0.1
1,507,107	+		Rru_A1279	0.78	-0.9
1,507,107	+		Rru_A1279	0.78	+0.3
1,507,108	-		Rru_A1279	0.78	-0.1
1,507,109	+		Rru_A1279	0.78	-1.2
1,507,109	+		Rru_A1279	0.78	-1.3
1,507,109	+		Rru_A1279	0.78	-0.1
1,507,109	+		Rru_A1279	0.78	-1.6
1,507,109	+		Rru_A1279	0.78	-0.1
1,507,109	+		Rru_A1279	0.78	-0.1
1,507,109	+		Rru_A1279	0.78	-0.1
1,507,109	+		Rru_A1279	0.78	-0.1
1,507,109	+		Rru_A1279	0.78	-1.1
1,507,110	-		Rru_A1279	0.78	-0.1
1,507,110	-		Rru_A1279	0.78	-1.4
1,507,110	-		Rru_A1279	0.78	-0.1
1,507,110	-		Rru_A1279	0.78	-0.1
1,507,110	-		Rru_A1279	0.78	-0.1
1,507,176	-		Rru_A1279	0.82	-0.1
1,507,176	-		Rru_A1279	0.82	-0.1
1,507,182	+		Rru_A1279	0.82	-0.1
1,507,182	+		Rru_A1279	0.82	-0.6
1,507,308	+		Rru_A1279	0.88	-0.1
1,507,308	+		Rru_A1279	0.88	-0.1
1,507,345	-				-0.1
1,507,423	+				-0.1
1,507,423	+				-0.1
1,507,424	-				-0.1
1,507,424	-				-0.1
1,507,440	+				-0.1
1,507,440	+				-0.1
1,507,443	+				-0.1
1,507,443	+				-0.1
1,507,444	-				-0.1
1,507,444	-				-0.1
1,507,444	-				-0.1
1,507,444	-				-0.1
1,507,581	+				-1.3
1,507,582	-				-0.1
1,507,582	-				-0.1
1,507,582	-				-0.1
1,507,583	+				-0.1
1,507,583	+				-1.5
1,507,584	-				-0.1
1,507,584	-				-0.1
1,507,613	-				-1.1
1,507,614	+				-0.1
1,507,615	-				-1.7
1,507,770	+				-0.1
1,507,771	-				-0.1
1,507,775	+				-0.1
1,507,775	+				-1.2
1,507,776	-				-0.1
1,507,776	-				-0.1
1,507,776	-				-0.1
1,507,780	+				-0.1
1,507,781	-				-0.1
1,507,787	-				-1.1
1,507,787	-				-0.1
1,507,875	+				-0.1
1,507,875	+				-0.1
1,507,875	+				-0.1
1,507,876	-				-0.1
1,507,876	-				-0.1
1,507,877	+				-0.1
1,507,877	+				-0.1
1,507,878	-				-0.1
1,507,878	-				-1.1
1,507,878	-				-0.1
1,507,878	-				-1.3
1,507,969	+				-1.8
1,507,970	-				-0.1
1,508,008	+				-1.9
1,508,008	+				-0.1
1,508,009	-				-0.1
1,508,009	-				-2.7
1,508,077	+				-1.1
1,508,077	+				-0.1
1,508,453	+		Rru_A1280	0.16	-0.1
1,508,453	+		Rru_A1280	0.16	-0.1
1,508,454	-		Rru_A1280	0.16	-1.1
1,508,484	+		Rru_A1280	0.19	-0.1
1,508,484	+		Rru_A1280	0.19	-0.1
1,508,485	-		Rru_A1280	0.19	-0.1
1,508,485	-		Rru_A1280	0.19	-1.5