Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0967 and Rru_A0968 overlap by 4 nucleotides Rru_A0968 and Rru_A0969 overlap by 4 nucleotides Rru_A0969 and Rru_A0970 are separated by 44 nucleotides Rru_A0970 and Rru_A0971 overlap by 4 nucleotides
Rru_A0967: Rru_A0967 - Carbon-monoxide dehydrogenase (NCBI), at 1,152,216 to 1,153,013
_A0967
Rru_A0968: Rru_A0968 - ATPase associated with various cellular activities, AAA_5 (NCBI), at 1,153,010 to 1,153,954
_A0968
Rru_A0969: Rru_A0969 - VWA containing CoxE-like (NCBI), at 1,153,951 to 1,155,216
_A0969
Rru_A0970: Rru_A0970 - hypothetical protein (NCBI), at 1,155,261 to 1,155,911
_A0970
Rru_A0971: Rru_A0971 - hypothetical protein (NCBI), at 1,155,908 to 1,157,548
_A0971
Position (kb) 1153
1154
1155
1156 Strain fitness (log2 ratio) -2
-1
0
1 at 1153.098 kb on - strand at 1153.250 kb on + strand, within Rru_A0968 at 1153.250 kb on + strand, within Rru_A0968 at 1153.250 kb on + strand, within Rru_A0968 at 1153.250 kb on + strand, within Rru_A0968 at 1153.251 kb on - strand, within Rru_A0968 at 1153.251 kb on - strand, within Rru_A0968 at 1153.251 kb on - strand, within Rru_A0968 at 1153.251 kb on - strand, within Rru_A0968 at 1153.251 kb on - strand, within Rru_A0968 at 1153.281 kb on - strand, within Rru_A0968 at 1153.622 kb on + strand, within Rru_A0968 at 1153.623 kb on - strand, within Rru_A0968 at 1153.623 kb on - strand, within Rru_A0968 at 1153.810 kb on + strand, within Rru_A0968 at 1153.810 kb on + strand, within Rru_A0968 at 1153.811 kb on - strand, within Rru_A0968 at 1153.811 kb on - strand, within Rru_A0968 at 1153.811 kb on - strand, within Rru_A0968 at 1153.865 kb on + strand at 1153.865 kb on + strand at 1153.865 kb on + strand at 1153.866 kb on - strand at 1153.866 kb on - strand at 1153.866 kb on - strand at 1154.022 kb on + strand at 1154.137 kb on + strand, within Rru_A0969 at 1154.138 kb on - strand, within Rru_A0969 at 1154.138 kb on - strand, within Rru_A0969 at 1154.138 kb on - strand, within Rru_A0969 at 1154.450 kb on - strand, within Rru_A0969 at 1154.674 kb on + strand, within Rru_A0969 at 1155.031 kb on + strand, within Rru_A0969 at 1155.105 kb on + strand at 1155.106 kb on - strand at 1155.106 kb on - strand at 1155.106 kb on - strand at 1155.215 kb on - strand at 1155.215 kb on - strand at 1155.400 kb on - strand, within Rru_A0970 at 1155.693 kb on + strand, within Rru_A0970 at 1155.693 kb on + strand, within Rru_A0970 at 1155.693 kb on + strand, within Rru_A0970 at 1155.693 kb on + strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 1,153,098 - -0.0 1,153,250 + Rru_A0968 0.25 -2.2 1,153,250 + Rru_A0968 0.25 -0.6 1,153,250 + Rru_A0968 0.25 -1.7 1,153,250 + Rru_A0968 0.25 -0.0 1,153,251 - Rru_A0968 0.26 -0.0 1,153,251 - Rru_A0968 0.26 -0.0 1,153,251 - Rru_A0968 0.26 -0.0 1,153,251 - Rru_A0968 0.26 -0.0 1,153,251 - Rru_A0968 0.26 -0.0 1,153,281 - Rru_A0968 0.29 -0.0 1,153,622 + Rru_A0968 0.65 -0.0 1,153,623 - Rru_A0968 0.65 -0.0 1,153,623 - Rru_A0968 0.65 -0.0 1,153,810 + Rru_A0968 0.85 -0.0 1,153,810 + Rru_A0968 0.85 -0.0 1,153,811 - Rru_A0968 0.85 -2.0 1,153,811 - Rru_A0968 0.85 -0.0 1,153,811 - Rru_A0968 0.85 -0.0 1,153,865 + -1.0 1,153,865 + -0.0 1,153,865 + -0.0 1,153,866 - -1.3 1,153,866 - -0.0 1,153,866 - -0.0 1,154,022 + -1.0 1,154,137 + Rru_A0969 0.15 -0.0 1,154,138 - Rru_A0969 0.15 -0.8 1,154,138 - Rru_A0969 0.15 -0.0 1,154,138 - Rru_A0969 0.15 -0.0 1,154,450 - Rru_A0969 0.39 -1.9 1,154,674 + Rru_A0969 0.57 -1.2 1,155,031 + Rru_A0969 0.85 -0.0 1,155,105 + -0.0 1,155,106 - -1.6 1,155,106 - -0.0 1,155,106 - -0.0 1,155,215 - -1.6 1,155,215 - -0.0 1,155,400 - Rru_A0970 0.21 -0.0 1,155,693 + Rru_A0970 0.66 -0.0 1,155,693 + Rru_A0970 0.66 -0.0 1,155,693 + Rru_A0970 0.66 -1.6 1,155,693 + Rru_A0970 0.66 -1.0 1,155,694 - Rru_A0970 0.67 -1.1 1,155,694 - Rru_A0970 0.67 -0.0 1,155,694 - Rru_A0970 0.67 -0.0 1,155,694 - Rru_A0970 0.67 -0.0 1,155,694 - Rru_A0970 0.67 -1.6 1,155,694 - Rru_A0970 0.67 -1.3 1,155,694 - Rru_A0970 0.67 -0.0 1,155,694 - Rru_A0970 0.67 -0.0 1,155,694 - Rru_A0970 0.67 -1.1
Or see this region's nucleotide sequence