Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0279

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0277 and Rru_A0278 are separated by 296 nucleotidesRru_A0278 and Rru_A0279 are separated by 52 nucleotidesRru_A0279 and Rru_A0280 are separated by 110 nucleotides Rru_A0277: Rru_A0277 - hypothetical protein (NCBI), at 342,065 to 342,571 _A0277 Rru_A0278: Rru_A0278 - Transcriptional Regulator, XRE family (NCBI), at 342,868 to 343,305 _A0278 Rru_A0279: Rru_A0279 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 343,358 to 344,485 _A0279 Rru_A0280: Rru_A0280 - Queuine tRNA-ribosyltransferase (NCBI), at 344,596 to 345,723 _A0280 Position (kb) 343 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1at 342.467 kb on + strand, within Rru_A0277at 342.467 kb on + strand, within Rru_A0277at 342.467 kb on + strand, within Rru_A0277at 342.468 kb on - strand, within Rru_A0277at 342.468 kb on - strand, within Rru_A0277at 342.468 kb on - strand, within Rru_A0277at 342.525 kb on + strandat 342.525 kb on + strandat 342.525 kb on + strandat 342.525 kb on + strandat 342.526 kb on - strandat 342.684 kb on - strandat 342.867 kb on + strandat 342.867 kb on + strandat 342.868 kb on - strandat 343.011 kb on + strand, within Rru_A0278at 343.012 kb on - strand, within Rru_A0278at 343.029 kb on + strand, within Rru_A0278at 343.029 kb on + strand, within Rru_A0278at 343.029 kb on + strand, within Rru_A0278at 343.029 kb on + strand, within Rru_A0278at 343.030 kb on - strand, within Rru_A0278at 343.030 kb on - strand, within Rru_A0278at 343.033 kb on + strand, within Rru_A0278at 343.034 kb on - strand, within Rru_A0278at 343.108 kb on + strand, within Rru_A0278at 343.108 kb on + strand, within Rru_A0278at 343.359 kb on + strandat 343.359 kb on + strandat 343.360 kb on - strandat 343.755 kb on + strand, within Rru_A0279at 343.755 kb on + strand, within Rru_A0279at 343.755 kb on + strand, within Rru_A0279at 343.755 kb on + strand, within Rru_A0279at 343.755 kb on + strand, within Rru_A0279at 343.755 kb on + strand, within Rru_A0279at 343.755 kb on + strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.821 kb on + strand, within Rru_A0279at 343.822 kb on - strand, within Rru_A0279at 343.822 kb on - strand, within Rru_A0279at 344.005 kb on + strand, within Rru_A0279at 344.005 kb on + strand, within Rru_A0279at 344.005 kb on + strand, within Rru_A0279at 344.005 kb on + strand, within Rru_A0279at 344.006 kb on - strand, within Rru_A0279at 344.006 kb on - strand, within Rru_A0279at 344.006 kb on - strand, within Rru_A0279at 344.006 kb on - strand, within Rru_A0279at 344.006 kb on - strand, within Rru_A0279at 344.006 kb on - strand, within Rru_A0279at 344.172 kb on + strand, within Rru_A0279at 344.173 kb on - strand, within Rru_A0279at 344.173 kb on - strand, within Rru_A0279at 344.235 kb on + strand, within Rru_A0279at 344.236 kb on - strand, within Rru_A0279at 344.236 kb on - strand, within Rru_A0279at 344.494 kb on + strandat 344.494 kb on + strandat 344.494 kb on + strandat 344.495 kb on - strandat 344.495 kb on - strandat 344.557 kb on + strandat 344.557 kb on + strandat 344.590 kb on - strandat 344.597 kb on + strandat 344.598 kb on - strandat 344.598 kb on - strandat 344.705 kb on + strandat 344.708 kb on + strandat 344.777 kb on + strand, within Rru_A0280at 344.777 kb on + strand, within Rru_A0280at 344.777 kb on + strand, within Rru_A0280at 344.777 kb on + strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.793 kb on + strand, within Rru_A0280at 344.793 kb on + strand, within Rru_A0280at 344.793 kb on + strand, within Rru_A0280at 344.793 kb on + strand, within Rru_A0280at 344.794 kb on - strand, within Rru_A0280at 344.794 kb on - strand, within Rru_A0280at 344.794 kb on - strand, within Rru_A0280at 344.993 kb on + strand, within Rru_A0280at 344.993 kb on + strand, within Rru_A0280at 344.994 kb on - strand, within Rru_A0280at 345.089 kb on + strand, within Rru_A0280at 345.089 kb on + strand, within Rru_A0280at 345.179 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.353 kb on - strand, within Rru_A0280at 345.353 kb on - strand, within Rru_A0280at 345.353 kb on - strand, within Rru_A0280at 345.437 kb on + strand, within Rru_A0280at 345.437 kb on + strand, within Rru_A0280

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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342,467 + Rru_A0277 0.79 +0.0
342,467 + Rru_A0277 0.79 +0.0
342,467 + Rru_A0277 0.79 -1.4
342,468 - Rru_A0277 0.79 +0.0
342,468 - Rru_A0277 0.79 -1.1
342,468 - Rru_A0277 0.79 -1.5
342,525 + +0.0
342,525 + +0.0
342,525 + +0.0
342,525 + +0.0
342,526 - +0.0
342,684 - +0.0
342,867 + +0.0
342,867 + -0.5
342,868 - +0.0
343,011 + Rru_A0278 0.33 -0.3
343,012 - Rru_A0278 0.33 +0.0
343,029 + Rru_A0278 0.37 +0.0
343,029 + Rru_A0278 0.37 +0.0
343,029 + Rru_A0278 0.37 -1.0
343,029 + Rru_A0278 0.37 +0.0
343,030 - Rru_A0278 0.37 +0.0
343,030 - Rru_A0278 0.37 -1.0
343,033 + Rru_A0278 0.38 +0.0
343,034 - Rru_A0278 0.38 +0.0
343,108 + Rru_A0278 0.55 +0.0
343,108 + Rru_A0278 0.55 +0.0
343,359 + -1.4
343,359 + +0.0
343,360 - +0.0
343,755 + Rru_A0279 0.35 +0.0
343,755 + Rru_A0279 0.35 -1.8
343,755 + Rru_A0279 0.35 +0.0
343,755 + Rru_A0279 0.35 -1.4
343,755 + Rru_A0279 0.35 +0.0
343,755 + Rru_A0279 0.35 -1.2
343,755 + Rru_A0279 0.35 +0.0
343,756 - Rru_A0279 0.35 +0.0
343,756 - Rru_A0279 0.35 -2.2
343,756 - Rru_A0279 0.35 +0.0
343,756 - Rru_A0279 0.35 -1.9
343,756 - Rru_A0279 0.35 +0.0
343,756 - Rru_A0279 0.35 +0.0
343,756 - Rru_A0279 0.35 -2.0
343,756 - Rru_A0279 0.35 +0.0
343,756 - Rru_A0279 0.35 -1.4
343,821 + Rru_A0279 0.41 -1.0
343,822 - Rru_A0279 0.41 +0.0
343,822 - Rru_A0279 0.41 +0.0
344,005 + Rru_A0279 0.57 +0.0
344,005 + Rru_A0279 0.57 +0.0
344,005 + Rru_A0279 0.57 +0.0
344,005 + Rru_A0279 0.57 +0.0
344,006 - Rru_A0279 0.57 +0.0
344,006 - Rru_A0279 0.57 -1.0
344,006 - Rru_A0279 0.57 +0.0
344,006 - Rru_A0279 0.57 +0.0
344,006 - Rru_A0279 0.57 +0.0
344,006 - Rru_A0279 0.57 +0.0
344,172 + Rru_A0279 0.72 +0.0
344,173 - Rru_A0279 0.72 -1.5
344,173 - Rru_A0279 0.72 +0.0
344,235 + Rru_A0279 0.78 +0.0
344,236 - Rru_A0279 0.78 +0.0
344,236 - Rru_A0279 0.78 +0.0
344,494 + -2.0
344,494 + +0.0
344,494 + -1.3
344,495 - +0.0
344,495 - +0.0
344,557 + +0.0
344,557 + +0.0
344,590 - +0.0
344,597 + -1.0
344,598 - +0.0
344,598 - +0.0
344,705 + -1.1
344,708 + -2.2
344,777 + Rru_A0280 0.16 +0.0
344,777 + Rru_A0280 0.16 +0.0
344,777 + Rru_A0280 0.16 +0.0
344,777 + Rru_A0280 0.16 +0.0
344,778 - Rru_A0280 0.16 +0.0
344,778 - Rru_A0280 0.16 -1.5
344,778 - Rru_A0280 0.16 +0.0
344,778 - Rru_A0280 0.16 -1.2
344,778 - Rru_A0280 0.16 -1.0
344,778 - Rru_A0280 0.16 +0.0
344,793 + Rru_A0280 0.17 +0.0
344,793 + Rru_A0280 0.17 -1.6
344,793 + Rru_A0280 0.17 +0.0
344,793 + Rru_A0280 0.17 -3.4
344,794 - Rru_A0280 0.18 +0.0
344,794 - Rru_A0280 0.18 +0.0
344,794 - Rru_A0280 0.18 +0.2
344,993 + Rru_A0280 0.35 -1.9
344,993 + Rru_A0280 0.35 +0.0
344,994 - Rru_A0280 0.35 -2.4
345,089 + Rru_A0280 0.44 +0.0
345,089 + Rru_A0280 0.44 +0.0
345,179 + Rru_A0280 0.52 +0.0
345,352 + Rru_A0280 0.67 +0.0
345,352 + Rru_A0280 0.67 +0.0
345,352 + Rru_A0280 0.67 +0.0
345,352 + Rru_A0280 0.67 +0.0
345,352 + Rru_A0280 0.67 -0.7
345,353 - Rru_A0280 0.67 +0.0
345,353 - Rru_A0280 0.67 +0.0
345,353 - Rru_A0280 0.67 +0.0
345,437 + Rru_A0280 0.75 +0.0
345,437 + Rru_A0280 0.75 -1.6

Or see this region's nucleotide sequence