Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0276 and Rru_A0277 are separated by 174 nucleotides Rru_A0277 and Rru_A0278 are separated by 296 nucleotides Rru_A0278 and Rru_A0279 are separated by 52 nucleotides
Rru_A0276: Rru_A0276 - Polyhydroxyalkanoate synthesis repressor PhaR (NCBI), at 341,285 to 341,890
_A0276
Rru_A0277: Rru_A0277 - hypothetical protein (NCBI), at 342,065 to 342,571
_A0277
Rru_A0278: Rru_A0278 - Transcriptional Regulator, XRE family (NCBI), at 342,868 to 343,305
_A0278
Rru_A0279: Rru_A0279 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 343,358 to 344,485
_A0279
Position (kb) 342
343
344 Strain fitness (log2 ratio) -2
-1
0
1 at 341.948 kb on - strand at 341.950 kb on + strand at 341.951 kb on - strand at 341.951 kb on - strand at 341.951 kb on - strand at 341.958 kb on + strand at 341.959 kb on - strand at 341.961 kb on - strand at 342.467 kb on + strand, within Rru_A0277 at 342.467 kb on + strand, within Rru_A0277 at 342.467 kb on + strand, within Rru_A0277 at 342.468 kb on - strand, within Rru_A0277 at 342.468 kb on - strand, within Rru_A0277 at 342.468 kb on - strand, within Rru_A0277 at 342.525 kb on + strand at 342.525 kb on + strand at 342.525 kb on + strand at 342.525 kb on + strand at 342.526 kb on - strand at 342.684 kb on - strand at 342.867 kb on + strand at 342.867 kb on + strand at 342.868 kb on - strand at 343.011 kb on + strand, within Rru_A0278 at 343.012 kb on - strand, within Rru_A0278 at 343.029 kb on + strand, within Rru_A0278 at 343.029 kb on + strand, within Rru_A0278 at 343.029 kb on + strand, within Rru_A0278 at 343.029 kb on + strand, within Rru_A0278 at 343.030 kb on - strand, within Rru_A0278 at 343.030 kb on - strand, within Rru_A0278 at 343.033 kb on + strand, within Rru_A0278 at 343.034 kb on - strand, within Rru_A0278 at 343.108 kb on + strand, within Rru_A0278 at 343.108 kb on + strand, within Rru_A0278 at 343.359 kb on + strand at 343.359 kb on + strand at 343.360 kb on - strand at 343.755 kb on + strand, within Rru_A0279 at 343.755 kb on + strand, within Rru_A0279 at 343.755 kb on + strand, within Rru_A0279 at 343.755 kb on + strand, within Rru_A0279 at 343.755 kb on + strand, within Rru_A0279 at 343.755 kb on + strand, within Rru_A0279 at 343.755 kb on + strand, within Rru_A0279 at 343.756 kb on - strand, within Rru_A0279 at 343.756 kb on - strand, within Rru_A0279 at 343.756 kb on - strand, within Rru_A0279 at 343.756 kb on - strand, within Rru_A0279 at 343.756 kb on - strand, within Rru_A0279 at 343.756 kb on - strand, within Rru_A0279 at 343.756 kb on - strand, within Rru_A0279 at 343.756 kb on - strand, within Rru_A0279 at 343.756 kb on - strand, within Rru_A0279 at 343.821 kb on + strand, within Rru_A0279 at 343.822 kb on - strand, within Rru_A0279 at 343.822 kb on - strand, within Rru_A0279 at 344.005 kb on + strand, within Rru_A0279 at 344.005 kb on + strand, within Rru_A0279 at 344.005 kb on + strand, within Rru_A0279 at 344.005 kb on + strand, within Rru_A0279 at 344.006 kb on - strand, within Rru_A0279 at 344.006 kb on - strand, within Rru_A0279 at 344.006 kb on - strand, within Rru_A0279 at 344.006 kb on - strand, within Rru_A0279 at 344.006 kb on - strand, within Rru_A0279 at 344.006 kb on - strand, within Rru_A0279 at 344.172 kb on + strand, within Rru_A0279 at 344.173 kb on - strand, within Rru_A0279 at 344.173 kb on - strand, within Rru_A0279 at 344.235 kb on + strand, within Rru_A0279 at 344.236 kb on - strand, within Rru_A0279 at 344.236 kb on - strand, within Rru_A0279
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 341,948 - -1.5 341,950 + +0.0 341,951 - -1.5 341,951 - +0.0 341,951 - +0.0 341,958 + +0.0 341,959 - +0.0 341,961 - -1.0 342,467 + Rru_A0277 0.79 +0.0 342,467 + Rru_A0277 0.79 +0.0 342,467 + Rru_A0277 0.79 -1.4 342,468 - Rru_A0277 0.79 +0.0 342,468 - Rru_A0277 0.79 -1.1 342,468 - Rru_A0277 0.79 -1.5 342,525 + +0.0 342,525 + +0.0 342,525 + +0.0 342,525 + +0.0 342,526 - +0.0 342,684 - +0.0 342,867 + +0.0 342,867 + -0.5 342,868 - +0.0 343,011 + Rru_A0278 0.33 -0.3 343,012 - Rru_A0278 0.33 +0.0 343,029 + Rru_A0278 0.37 +0.0 343,029 + Rru_A0278 0.37 +0.0 343,029 + Rru_A0278 0.37 -1.0 343,029 + Rru_A0278 0.37 +0.0 343,030 - Rru_A0278 0.37 +0.0 343,030 - Rru_A0278 0.37 -1.0 343,033 + Rru_A0278 0.38 +0.0 343,034 - Rru_A0278 0.38 +0.0 343,108 + Rru_A0278 0.55 +0.0 343,108 + Rru_A0278 0.55 +0.0 343,359 + -1.4 343,359 + +0.0 343,360 - +0.0 343,755 + Rru_A0279 0.35 +0.0 343,755 + Rru_A0279 0.35 -1.8 343,755 + Rru_A0279 0.35 +0.0 343,755 + Rru_A0279 0.35 -1.4 343,755 + Rru_A0279 0.35 +0.0 343,755 + Rru_A0279 0.35 -1.2 343,755 + Rru_A0279 0.35 +0.0 343,756 - Rru_A0279 0.35 +0.0 343,756 - Rru_A0279 0.35 -2.2 343,756 - Rru_A0279 0.35 +0.0 343,756 - Rru_A0279 0.35 -1.9 343,756 - Rru_A0279 0.35 +0.0 343,756 - Rru_A0279 0.35 +0.0 343,756 - Rru_A0279 0.35 -2.0 343,756 - Rru_A0279 0.35 +0.0 343,756 - Rru_A0279 0.35 -1.4 343,821 + Rru_A0279 0.41 -1.0 343,822 - Rru_A0279 0.41 +0.0 343,822 - Rru_A0279 0.41 +0.0 344,005 + Rru_A0279 0.57 +0.0 344,005 + Rru_A0279 0.57 +0.0 344,005 + Rru_A0279 0.57 +0.0 344,005 + Rru_A0279 0.57 +0.0 344,006 - Rru_A0279 0.57 +0.0 344,006 - Rru_A0279 0.57 -1.0 344,006 - Rru_A0279 0.57 +0.0 344,006 - Rru_A0279 0.57 +0.0 344,006 - Rru_A0279 0.57 +0.0 344,006 - Rru_A0279 0.57 +0.0 344,172 + Rru_A0279 0.72 +0.0 344,173 - Rru_A0279 0.72 -1.5 344,173 - Rru_A0279 0.72 +0.0 344,235 + Rru_A0279 0.78 +0.0 344,236 - Rru_A0279 0.78 +0.0 344,236 - Rru_A0279 0.78 +0.0
Or see this region's nucleotide sequence