Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_548

Experiment: Magnesium chloride 0.125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_546 and Pf6N2E2_547 are separated by 221 nucleotidesPf6N2E2_547 and Pf6N2E2_548 are separated by 13 nucleotidesPf6N2E2_548 and Pf6N2E2_549 are separated by 620 nucleotides Pf6N2E2_546 - FIG00966904: hypothetical protein, at 615,541 to 615,936 _546 Pf6N2E2_547 - Phophatidylinositol-4-phosphate 5-kinase (EC 2.7.1.68), at 616,158 to 616,700 _547 Pf6N2E2_548 - VgrG protein, at 616,714 to 618,723 _548 Pf6N2E2_549 - ClpB protein, at 619,344 to 621,887 _549 Position (kb) 616 617 618 619Strain fitness (log2 ratio) -2 -1 0 1 2at 615.859 kb on - strand, within Pf6N2E2_546at 615.876 kb on + strand, within Pf6N2E2_546at 615.877 kb on - strand, within Pf6N2E2_546at 615.938 kb on + strandat 615.963 kb on + strandat 615.963 kb on + strandat 615.963 kb on + strandat 615.963 kb on + strandat 615.964 kb on - strandat 615.964 kb on - strandat 615.964 kb on - strandat 615.964 kb on - strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.972 kb on + strandat 615.973 kb on - strandat 615.973 kb on - strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.977 kb on - strandat 615.977 kb on - strandat 615.977 kb on - strandat 615.977 kb on - strandat 615.977 kb on - strandat 615.984 kb on + strandat 615.984 kb on + strandat 615.984 kb on + strandat 615.984 kb on + strandat 615.985 kb on - strandat 615.985 kb on - strandat 615.985 kb on - strandat 616.092 kb on + strandat 616.160 kb on - strandat 616.160 kb on - strandat 616.160 kb on - strandat 616.160 kb on - strandat 616.396 kb on + strand, within Pf6N2E2_547at 616.397 kb on - strand, within Pf6N2E2_547at 616.397 kb on - strand, within Pf6N2E2_547at 616.433 kb on - strand, within Pf6N2E2_547at 616.469 kb on - strand, within Pf6N2E2_547at 616.469 kb on - strand, within Pf6N2E2_547at 616.576 kb on + strand, within Pf6N2E2_547at 617.012 kb on + strand, within Pf6N2E2_548at 617.036 kb on + strand, within Pf6N2E2_548at 617.418 kb on - strand, within Pf6N2E2_548at 617.612 kb on + strand, within Pf6N2E2_548at 617.613 kb on - strand, within Pf6N2E2_548at 617.669 kb on + strand, within Pf6N2E2_548at 617.669 kb on + strand, within Pf6N2E2_548at 617.670 kb on - strand, within Pf6N2E2_548at 617.670 kb on - strand, within Pf6N2E2_548at 617.670 kb on - strand, within Pf6N2E2_548at 617.705 kb on + strand, within Pf6N2E2_548at 617.963 kb on + strand, within Pf6N2E2_548at 617.963 kb on + strand, within Pf6N2E2_548at 617.963 kb on + strand, within Pf6N2E2_548at 617.964 kb on - strand, within Pf6N2E2_548at 618.032 kb on + strand, within Pf6N2E2_548at 618.128 kb on + strand, within Pf6N2E2_548at 618.128 kb on + strand, within Pf6N2E2_548at 618.279 kb on - strand, within Pf6N2E2_548at 618.279 kb on - strand, within Pf6N2E2_548at 618.290 kb on + strand, within Pf6N2E2_548at 618.306 kb on - strand, within Pf6N2E2_548at 618.306 kb on - strand, within Pf6N2E2_548at 618.452 kb on + strand, within Pf6N2E2_548at 618.659 kb on + strandat 618.659 kb on + strandat 618.660 kb on - strandat 618.743 kb on - strandat 618.764 kb on + strandat 618.764 kb on + strandat 618.784 kb on + strandat 618.787 kb on + strandat 618.787 kb on + strandat 618.787 kb on + strandat 618.788 kb on - strandat 618.818 kb on - strandat 618.874 kb on + strandat 618.875 kb on - strandat 618.875 kb on - strandat 618.907 kb on + strandat 618.907 kb on + strandat 618.907 kb on + strandat 618.907 kb on + strandat 618.908 kb on - strandat 618.908 kb on - strandat 618.908 kb on - strandat 618.908 kb on - strandat 618.908 kb on - strandat 618.908 kb on - strandat 618.911 kb on + strandat 618.997 kb on + strandat 618.998 kb on - strandat 618.998 kb on - strandat 618.999 kb on + strandat 618.999 kb on + strandat 618.999 kb on + strandat 618.999 kb on + strandat 618.999 kb on + strandat 619.000 kb on - strandat 619.000 kb on - strandat 619.006 kb on + strandat 619.006 kb on + strandat 619.007 kb on - strandat 619.068 kb on - strandat 619.123 kb on + strandat 619.124 kb on - strandat 619.124 kb on - strandat 619.124 kb on - strandat 619.154 kb on - strandat 619.154 kb on - strandat 619.154 kb on - strandat 619.154 kb on - strandat 619.156 kb on + strandat 619.157 kb on - strandat 619.157 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Magnesium chloride 0.125 M
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615,859 - Pf6N2E2_546 0.80 -0.3
615,876 + Pf6N2E2_546 0.85 +0.4
615,877 - Pf6N2E2_546 0.85 +0.7
615,938 + +0.1
615,963 + +0.7
615,963 + +0.1
615,963 + -0.4
615,963 + -0.3
615,964 - +1.3
615,964 - -1.1
615,964 - -0.9
615,964 - +0.6
615,967 + +0.8
615,967 + -0.9
615,967 + +0.8
615,967 + +0.3
615,967 + -0.2
615,967 + -0.2
615,967 + +0.3
615,968 - -1.2
615,968 - -0.2
615,968 - -0.9
615,968 - -0.3
615,968 - -0.3
615,968 - -0.5
615,968 - -0.3
615,968 - +0.2
615,968 - +0.7
615,968 - +2.0
615,968 - -0.1
615,968 - +0.6
615,968 - -1.0
615,972 + -0.2
615,973 - -0.8
615,973 - +0.9
615,976 + +1.2
615,976 + -0.3
615,976 + -1.2
615,976 + +0.4
615,976 + -1.3
615,976 + -0.9
615,976 + +0.4
615,976 + +0.2
615,976 + -0.1
615,976 + +0.7
615,977 - +0.2
615,977 - +0.1
615,977 - -1.2
615,977 - +0.3
615,977 - +0.7
615,984 + +0.2
615,984 + -0.6
615,984 + +0.4
615,984 + +0.2
615,985 - -0.7
615,985 - +0.1
615,985 - -0.4
616,092 + +0.4
616,160 - +0.6
616,160 - +0.7
616,160 - +0.2
616,160 - +0.9
616,396 + Pf6N2E2_547 0.44 -0.3
616,397 - Pf6N2E2_547 0.44 +0.2
616,397 - Pf6N2E2_547 0.44 +0.3
616,433 - Pf6N2E2_547 0.51 +0.5
616,469 - Pf6N2E2_547 0.57 -1.4
616,469 - Pf6N2E2_547 0.57 +0.7
616,576 + Pf6N2E2_547 0.77 -0.8
617,012 + Pf6N2E2_548 0.15 -0.3
617,036 + Pf6N2E2_548 0.16 -0.6
617,418 - Pf6N2E2_548 0.35 -0.8
617,612 + Pf6N2E2_548 0.45 -0.1
617,613 - Pf6N2E2_548 0.45 -0.1
617,669 + Pf6N2E2_548 0.48 -0.7
617,669 + Pf6N2E2_548 0.48 +1.9
617,670 - Pf6N2E2_548 0.48 -1.2
617,670 - Pf6N2E2_548 0.48 -1.2
617,670 - Pf6N2E2_548 0.48 -0.7
617,705 + Pf6N2E2_548 0.49 -1.9
617,963 + Pf6N2E2_548 0.62 -1.8
617,963 + Pf6N2E2_548 0.62 -0.6
617,963 + Pf6N2E2_548 0.62 -0.1
617,964 - Pf6N2E2_548 0.62 -0.3
618,032 + Pf6N2E2_548 0.66 +1.0
618,128 + Pf6N2E2_548 0.70 +0.3
618,128 + Pf6N2E2_548 0.70 -0.8
618,279 - Pf6N2E2_548 0.78 +0.2
618,279 - Pf6N2E2_548 0.78 -1.5
618,290 + Pf6N2E2_548 0.78 -0.5
618,306 - Pf6N2E2_548 0.79 +0.3
618,306 - Pf6N2E2_548 0.79 -1.2
618,452 + Pf6N2E2_548 0.86 +1.7
618,659 + +2.7
618,659 + +0.2
618,660 - -0.7
618,743 - -0.4
618,764 + +0.1
618,764 + -1.7
618,784 + -1.9
618,787 + +0.1
618,787 + -1.2
618,787 + +1.1
618,788 - +0.2
618,818 - +0.3
618,874 + +0.9
618,875 - +0.1
618,875 - +0.7
618,907 + -0.6
618,907 + +0.6
618,907 + +0.9
618,907 + +0.3
618,908 - -1.7
618,908 - -0.7
618,908 - +0.5
618,908 - +1.8
618,908 - +0.4
618,908 - -0.7
618,911 + -0.5
618,997 + -0.1
618,998 - -0.1
618,998 - +0.1
618,999 + +0.7
618,999 + -0.0
618,999 + -0.5
618,999 + +0.2
618,999 + +0.7
619,000 - -0.5
619,000 - +0.8
619,006 + -0.4
619,006 + -0.5
619,007 - +0.5
619,068 - +0.2
619,123 + +0.1
619,124 - +1.2
619,124 - +2.5
619,124 - +0.2
619,154 - +1.2
619,154 - +1.5
619,154 - -0.3
619,154 - -0.3
619,156 + +0.2
619,157 - +1.2
619,157 - -0.0

Or see this region's nucleotide sequence