Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2646

Experiment: Magnesium chloride 0.125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2645 and Pf6N2E2_2646 are separated by 433 nucleotidesPf6N2E2_2646 and Pf6N2E2_2647 are separated by 8 nucleotidesPf6N2E2_2647 and Pf6N2E2_2648 are separated by 140 nucleotides Pf6N2E2_2645 - ATP-dependent DNA helicase RecQ, at 3,107,976 to 3,110,102 _2645 Pf6N2E2_2646 - FIG00953416: hypothetical protein, at 3,110,536 to 3,111,123 _2646 Pf6N2E2_2647 - FIG039061: hypothetical protein related to heme utilization, at 3,111,132 to 3,111,527 _2647 Pf6N2E2_2648 - T1SS secreted agglutinin RTX, at 3,111,668 to 3,120,229 _2648 Position (kb) 3110 3111 3112Strain fitness (log2 ratio) -3 -2 -1 0 1at 3109.642 kb on + strand, within Pf6N2E2_2645at 3109.642 kb on + strand, within Pf6N2E2_2645at 3109.643 kb on - strand, within Pf6N2E2_2645at 3109.736 kb on + strand, within Pf6N2E2_2645at 3109.736 kb on + strand, within Pf6N2E2_2645at 3109.736 kb on + strand, within Pf6N2E2_2645at 3109.737 kb on - strand, within Pf6N2E2_2645at 3109.737 kb on - strand, within Pf6N2E2_2645at 3109.737 kb on - strand, within Pf6N2E2_2645at 3109.737 kb on - strand, within Pf6N2E2_2645at 3109.737 kb on - strand, within Pf6N2E2_2645at 3109.768 kb on + strand, within Pf6N2E2_2645at 3109.769 kb on - strand, within Pf6N2E2_2645at 3110.102 kb on + strandat 3110.102 kb on + strandat 3110.102 kb on + strandat 3110.102 kb on + strandat 3110.103 kb on - strandat 3110.103 kb on - strandat 3110.176 kb on - strandat 3110.176 kb on - strandat 3110.176 kb on - strandat 3110.229 kb on + strandat 3110.229 kb on + strandat 3110.414 kb on + strandat 3110.414 kb on + strandat 3110.414 kb on + strandat 3110.414 kb on + strandat 3110.415 kb on - strandat 3110.415 kb on - strandat 3110.415 kb on - strandat 3110.415 kb on - strandat 3110.415 kb on - strandat 3110.415 kb on - strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.416 kb on + strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.417 kb on - strandat 3110.462 kb on - strandat 3110.462 kb on - strandat 3110.462 kb on - strandat 3110.534 kb on + strandat 3110.612 kb on - strand, within Pf6N2E2_2646at 3110.612 kb on - strand, within Pf6N2E2_2646at 3110.630 kb on - strand, within Pf6N2E2_2646at 3111.171 kb on + strandat 3111.300 kb on + strand, within Pf6N2E2_2647at 3111.300 kb on + strand, within Pf6N2E2_2647at 3111.300 kb on + strand, within Pf6N2E2_2647at 3111.301 kb on - strand, within Pf6N2E2_2647at 3111.301 kb on - strand, within Pf6N2E2_2647at 3111.313 kb on + strand, within Pf6N2E2_2647at 3111.313 kb on + strand, within Pf6N2E2_2647at 3111.348 kb on + strand, within Pf6N2E2_2647at 3111.349 kb on - strand, within Pf6N2E2_2647at 3111.380 kb on + strand, within Pf6N2E2_2647at 3111.387 kb on + strand, within Pf6N2E2_2647at 3111.388 kb on - strand, within Pf6N2E2_2647at 3111.388 kb on - strand, within Pf6N2E2_2647at 3111.429 kb on + strand, within Pf6N2E2_2647at 3111.492 kb on + strandat 3111.492 kb on + strandat 3111.492 kb on + strandat 3111.493 kb on - strandat 3111.493 kb on - strandat 3111.493 kb on - strandat 3111.493 kb on - strandat 3111.493 kb on - strandat 3111.494 kb on + strandat 3111.494 kb on + strandat 3111.495 kb on - strandat 3111.495 kb on - strandat 3111.495 kb on - strandat 3111.495 kb on - strandat 3111.655 kb on - strandat 3111.655 kb on - strandat 3111.853 kb on + strandat 3111.854 kb on - strandat 3111.854 kb on - strandat 3111.854 kb on - strandat 3111.895 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Magnesium chloride 0.125 M
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3,109,642 + Pf6N2E2_2645 0.78 -0.2
3,109,642 + Pf6N2E2_2645 0.78 +0.3
3,109,643 - Pf6N2E2_2645 0.78 +1.2
3,109,736 + Pf6N2E2_2645 0.83 -1.0
3,109,736 + Pf6N2E2_2645 0.83 +1.4
3,109,736 + Pf6N2E2_2645 0.83 +0.0
3,109,737 - Pf6N2E2_2645 0.83 +0.7
3,109,737 - Pf6N2E2_2645 0.83 +0.8
3,109,737 - Pf6N2E2_2645 0.83 +1.6
3,109,737 - Pf6N2E2_2645 0.83 +0.9
3,109,737 - Pf6N2E2_2645 0.83 +0.8
3,109,768 + Pf6N2E2_2645 0.84 +0.0
3,109,769 - Pf6N2E2_2645 0.84 -0.2
3,110,102 + +1.2
3,110,102 + +0.2
3,110,102 + -0.9
3,110,102 + +0.3
3,110,103 - +0.5
3,110,103 - +1.2
3,110,176 - +0.2
3,110,176 - -1.1
3,110,176 - -2.1
3,110,229 + +0.7
3,110,229 + -1.0
3,110,414 + +0.8
3,110,414 + -0.9
3,110,414 + +0.5
3,110,414 + +0.4
3,110,415 - -0.4
3,110,415 - +0.3
3,110,415 - -0.9
3,110,415 - -0.6
3,110,415 - -0.6
3,110,415 - -0.1
3,110,416 + -0.3
3,110,416 + -0.5
3,110,416 + +0.7
3,110,416 + -0.9
3,110,416 + +0.9
3,110,416 + -0.1
3,110,416 + -0.6
3,110,416 + +0.1
3,110,416 + -0.5
3,110,416 + -0.3
3,110,416 + -1.0
3,110,416 + +1.0
3,110,416 + -0.1
3,110,416 + +0.1
3,110,416 + +0.2
3,110,416 + +0.3
3,110,416 + +0.6
3,110,417 - -0.1
3,110,417 - -0.7
3,110,417 - -0.3
3,110,417 - -0.4
3,110,417 - -1.1
3,110,417 - -2.9
3,110,417 - -0.7
3,110,417 - -0.5
3,110,417 - -1.0
3,110,417 - -0.6
3,110,417 - -0.3
3,110,417 - -0.9
3,110,417 - -0.9
3,110,417 - -0.0
3,110,417 - -0.9
3,110,417 - -0.1
3,110,417 - -1.6
3,110,417 - -0.6
3,110,462 - -1.1
3,110,462 - -0.2
3,110,462 - -0.0
3,110,534 + -0.9
3,110,612 - Pf6N2E2_2646 0.13 -0.1
3,110,612 - Pf6N2E2_2646 0.13 +0.1
3,110,630 - Pf6N2E2_2646 0.16 -1.9
3,111,171 + -0.2
3,111,300 + Pf6N2E2_2647 0.42 +0.6
3,111,300 + Pf6N2E2_2647 0.42 +1.4
3,111,300 + Pf6N2E2_2647 0.42 -0.2
3,111,301 - Pf6N2E2_2647 0.43 +1.0
3,111,301 - Pf6N2E2_2647 0.43 +0.0
3,111,313 + Pf6N2E2_2647 0.46 +0.0
3,111,313 + Pf6N2E2_2647 0.46 -0.7
3,111,348 + Pf6N2E2_2647 0.55 +0.3
3,111,349 - Pf6N2E2_2647 0.55 -0.7
3,111,380 + Pf6N2E2_2647 0.63 -1.0
3,111,387 + Pf6N2E2_2647 0.64 +0.9
3,111,388 - Pf6N2E2_2647 0.65 +0.9
3,111,388 - Pf6N2E2_2647 0.65 -0.3
3,111,429 + Pf6N2E2_2647 0.75 -0.3
3,111,492 + -0.2
3,111,492 + +0.2
3,111,492 + +1.0
3,111,493 - +1.6
3,111,493 - +1.6
3,111,493 - -0.5
3,111,493 - +0.5
3,111,493 - +0.6
3,111,494 + -0.1
3,111,494 + +0.1
3,111,495 - -0.2
3,111,495 - -0.5
3,111,495 - +0.4
3,111,495 - +0.3
3,111,655 - -0.8
3,111,655 - -0.4
3,111,853 + +1.6
3,111,854 - +0.6
3,111,854 - +0.3
3,111,854 - -0.3
3,111,895 - -0.0

Or see this region's nucleotide sequence