Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18190

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18185 and CSW01_18190 are separated by 313 nucleotidesCSW01_18190 and CSW01_18195 are separated by 94 nucleotidesCSW01_18195 and CSW01_18200 are separated by 87 nucleotides CSW01_18185: CSW01_18185 - DEAD/DEAH box family ATP-dependent RNA helicase, at 744,675 to 746,666 _18185 CSW01_18190: CSW01_18190 - exoribonuclease 2, at 746,980 to 749,016 _18190 CSW01_18195: CSW01_18195 - DUF3024 domain-containing protein, at 749,111 to 749,584 _18195 CSW01_18200: CSW01_18200 - ABC transporter substrate-binding protein, at 749,672 to 750,508 _18200 Position (kb) 746 747 748 749 750Strain fitness (log2 ratio) -2 -1 0 1 2 3at 746.185 kb on - strand, within CSW01_18185at 746.214 kb on + strand, within CSW01_18185at 746.280 kb on + strand, within CSW01_18185at 746.466 kb on - strand, within CSW01_18185at 746.568 kb on - strandat 747.073 kb on + strandat 747.110 kb on + strandat 747.195 kb on + strand, within CSW01_18190at 747.211 kb on - strand, within CSW01_18190at 747.211 kb on - strand, within CSW01_18190at 747.372 kb on + strand, within CSW01_18190at 747.524 kb on + strand, within CSW01_18190at 747.560 kb on - strand, within CSW01_18190at 747.706 kb on - strand, within CSW01_18190at 747.706 kb on - strand, within CSW01_18190at 747.796 kb on + strand, within CSW01_18190at 747.832 kb on + strand, within CSW01_18190at 747.832 kb on + strand, within CSW01_18190at 747.832 kb on + strand, within CSW01_18190at 747.840 kb on - strand, within CSW01_18190at 747.840 kb on - strand, within CSW01_18190at 747.840 kb on - strand, within CSW01_18190at 747.840 kb on - strand, within CSW01_18190at 747.840 kb on - strand, within CSW01_18190at 747.840 kb on - strand, within CSW01_18190at 747.840 kb on - strand, within CSW01_18190at 747.840 kb on - strand, within CSW01_18190at 747.847 kb on + strand, within CSW01_18190at 747.847 kb on + strand, within CSW01_18190at 747.847 kb on + strand, within CSW01_18190at 747.847 kb on + strand, within CSW01_18190at 747.903 kb on + strand, within CSW01_18190at 747.911 kb on - strand, within CSW01_18190at 747.962 kb on + strand, within CSW01_18190at 748.019 kb on - strand, within CSW01_18190at 748.073 kb on - strand, within CSW01_18190at 748.084 kb on - strand, within CSW01_18190at 748.096 kb on - strand, within CSW01_18190at 748.132 kb on + strand, within CSW01_18190at 748.158 kb on + strand, within CSW01_18190at 748.193 kb on - strand, within CSW01_18190at 748.237 kb on + strand, within CSW01_18190at 748.274 kb on + strand, within CSW01_18190at 748.289 kb on - strand, within CSW01_18190at 748.413 kb on + strand, within CSW01_18190at 748.460 kb on + strand, within CSW01_18190at 748.475 kb on + strand, within CSW01_18190at 748.602 kb on - strand, within CSW01_18190at 748.639 kb on + strand, within CSW01_18190at 748.647 kb on - strand, within CSW01_18190at 748.821 kb on - strandat 748.823 kb on + strandat 748.831 kb on - strandat 749.010 kb on + strandat 749.100 kb on - strandat 749.161 kb on - strand, within CSW01_18195at 749.227 kb on + strand, within CSW01_18195at 749.249 kb on + strand, within CSW01_18195at 749.367 kb on - strand, within CSW01_18195at 749.388 kb on - strand, within CSW01_18195at 749.401 kb on - strand, within CSW01_18195at 749.528 kb on + strand, within CSW01_18195at 749.591 kb on + strandat 749.629 kb on + strandat 749.740 kb on - strandat 749.955 kb on + strand, within CSW01_18200at 749.955 kb on + strand, within CSW01_18200at 749.955 kb on + strand, within CSW01_18200at 749.963 kb on - strand, within CSW01_18200at 750.006 kb on - strand, within CSW01_18200at 750.006 kb on - strand, within CSW01_18200

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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746,185 - CSW01_18185 0.76 -1.8
746,214 + CSW01_18185 0.77 +0.4
746,280 + CSW01_18185 0.81 +2.4
746,466 - CSW01_18185 0.90 +3.4
746,568 - +2.1
747,073 + -0.4
747,110 + -1.1
747,195 + CSW01_18190 0.11 +0.1
747,211 - CSW01_18190 0.11 +0.5
747,211 - CSW01_18190 0.11 +0.5
747,372 + CSW01_18190 0.19 -0.5
747,524 + CSW01_18190 0.27 +1.1
747,560 - CSW01_18190 0.28 -2.4
747,706 - CSW01_18190 0.36 +2.0
747,706 - CSW01_18190 0.36 -0.1
747,796 + CSW01_18190 0.40 -2.3
747,832 + CSW01_18190 0.42 +0.0
747,832 + CSW01_18190 0.42 -0.1
747,832 + CSW01_18190 0.42 +0.9
747,840 - CSW01_18190 0.42 -0.2
747,840 - CSW01_18190 0.42 +0.7
747,840 - CSW01_18190 0.42 -0.2
747,840 - CSW01_18190 0.42 +0.7
747,840 - CSW01_18190 0.42 -1.4
747,840 - CSW01_18190 0.42 +0.7
747,840 - CSW01_18190 0.42 +1.1
747,840 - CSW01_18190 0.42 -2.1
747,847 + CSW01_18190 0.43 +1.3
747,847 + CSW01_18190 0.43 -0.9
747,847 + CSW01_18190 0.43 -1.9
747,847 + CSW01_18190 0.43 -2.3
747,903 + CSW01_18190 0.45 -0.7
747,911 - CSW01_18190 0.46 +2.9
747,962 + CSW01_18190 0.48 -0.2
748,019 - CSW01_18190 0.51 -0.7
748,073 - CSW01_18190 0.54 +0.3
748,084 - CSW01_18190 0.54 -0.5
748,096 - CSW01_18190 0.55 -1.2
748,132 + CSW01_18190 0.57 -0.7
748,158 + CSW01_18190 0.58 -0.7
748,193 - CSW01_18190 0.60 -1.5
748,237 + CSW01_18190 0.62 -0.3
748,274 + CSW01_18190 0.64 -0.5
748,289 - CSW01_18190 0.64 -1.3
748,413 + CSW01_18190 0.70 +0.3
748,460 + CSW01_18190 0.73 -1.5
748,475 + CSW01_18190 0.73 -1.0
748,602 - CSW01_18190 0.80 -2.2
748,639 + CSW01_18190 0.81 -0.8
748,647 - CSW01_18190 0.82 -2.3
748,821 - +0.2
748,823 + -0.5
748,831 - +1.6
749,010 + +1.9
749,100 - +0.8
749,161 - CSW01_18195 0.11 +0.8
749,227 + CSW01_18195 0.24 +0.5
749,249 + CSW01_18195 0.29 +0.9
749,367 - CSW01_18195 0.54 +1.2
749,388 - CSW01_18195 0.58 +0.8
749,401 - CSW01_18195 0.61 +0.1
749,528 + CSW01_18195 0.88 +0.1
749,591 + +0.1
749,629 + -0.5
749,740 - +0.9
749,955 + CSW01_18200 0.34 -0.2
749,955 + CSW01_18200 0.34 +0.9
749,955 + CSW01_18200 0.34 +0.9
749,963 - CSW01_18200 0.35 -0.8
750,006 - CSW01_18200 0.40 -0.3
750,006 - CSW01_18200 0.40 -0.1

Or see this region's nucleotide sequence