Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17800

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17795 and CSW01_17800 are separated by 13 nucleotidesCSW01_17800 and CSW01_17805 are separated by 0 nucleotidesCSW01_17805 and CSW01_17810 are separated by 5 nucleotides CSW01_17795: CSW01_17795 - molybdenum import ATP-binding protein ModC, at 666,120 to 667,220 _17795 CSW01_17800: CSW01_17800 - molybdate ABC transporter permease subunit, at 667,234 to 667,932 _17800 CSW01_17805: CSW01_17805 - molybdate ABC transporter substrate-binding protein, at 667,933 to 668,697 _17805 CSW01_17810: CSW01_17810 - cobyric acid synthase CobQ, at 668,703 to 670,157 _17810 Position (kb) 667 668Strain fitness (log2 ratio) -2 -1 0 1 2 3at 666.408 kb on + strand, within CSW01_17795at 666.513 kb on - strand, within CSW01_17795at 666.581 kb on + strand, within CSW01_17795at 666.581 kb on + strand, within CSW01_17795at 666.581 kb on + strand, within CSW01_17795at 666.581 kb on + strand, within CSW01_17795at 666.595 kb on + strand, within CSW01_17795at 666.596 kb on - strand, within CSW01_17795at 666.596 kb on - strand, within CSW01_17795at 666.613 kb on - strand, within CSW01_17795at 666.747 kb on - strand, within CSW01_17795at 666.948 kb on - strand, within CSW01_17795at 666.949 kb on + strand, within CSW01_17795at 666.954 kb on + strand, within CSW01_17795at 666.992 kb on + strand, within CSW01_17795at 667.088 kb on + strand, within CSW01_17795at 667.240 kb on + strandat 667.245 kb on + strandat 667.269 kb on + strandat 667.277 kb on - strandat 667.335 kb on - strand, within CSW01_17800at 667.369 kb on + strand, within CSW01_17800at 667.443 kb on + strand, within CSW01_17800at 667.496 kb on + strand, within CSW01_17800at 667.504 kb on - strand, within CSW01_17800at 667.539 kb on + strand, within CSW01_17800at 667.539 kb on + strand, within CSW01_17800at 667.539 kb on + strand, within CSW01_17800at 667.539 kb on + strand, within CSW01_17800at 667.539 kb on + strand, within CSW01_17800at 667.541 kb on + strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.549 kb on - strand, within CSW01_17800at 667.596 kb on - strand, within CSW01_17800at 667.610 kb on + strand, within CSW01_17800at 667.610 kb on + strand, within CSW01_17800at 667.618 kb on - strand, within CSW01_17800at 667.649 kb on - strand, within CSW01_17800at 667.831 kb on + strand, within CSW01_17800at 667.858 kb on + strand, within CSW01_17800at 667.866 kb on - strandat 667.881 kb on + strandat 667.889 kb on - strandat 667.889 kb on - strandat 667.925 kb on + strandat 668.128 kb on - strand, within CSW01_17805at 668.216 kb on + strand, within CSW01_17805at 668.216 kb on + strand, within CSW01_17805at 668.216 kb on + strand, within CSW01_17805at 668.219 kb on - strand, within CSW01_17805at 668.220 kb on + strand, within CSW01_17805at 668.224 kb on - strand, within CSW01_17805at 668.260 kb on + strand, within CSW01_17805at 668.345 kb on - strand, within CSW01_17805at 668.379 kb on - strand, within CSW01_17805at 668.427 kb on - strand, within CSW01_17805at 668.427 kb on - strand, within CSW01_17805at 668.546 kb on + strand, within CSW01_17805at 668.551 kb on + strand, within CSW01_17805at 668.559 kb on - strand, within CSW01_17805at 668.564 kb on - strand, within CSW01_17805at 668.564 kb on - strand, within CSW01_17805at 668.564 kb on - strand, within CSW01_17805at 668.588 kb on + strand, within CSW01_17805at 668.646 kb on - strandat 668.693 kb on + strandat 668.775 kb on + strandat 668.775 kb on + strandat 668.775 kb on + strandat 668.783 kb on - strandat 668.783 kb on - strandat 668.783 kb on - strandat 668.783 kb on - strandat 668.810 kb on + strandat 668.810 kb on + strandat 668.890 kb on + strand, within CSW01_17810at 668.894 kb on - strand, within CSW01_17810at 668.912 kb on - strand, within CSW01_17810

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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666,408 + CSW01_17795 0.26 +0.0
666,513 - CSW01_17795 0.36 +1.6
666,581 + CSW01_17795 0.42 +1.3
666,581 + CSW01_17795 0.42 +3.1
666,581 + CSW01_17795 0.42 +1.0
666,581 + CSW01_17795 0.42 +0.0
666,595 + CSW01_17795 0.43 +0.8
666,596 - CSW01_17795 0.43 -0.6
666,596 - CSW01_17795 0.43 +0.0
666,613 - CSW01_17795 0.45 +0.6
666,747 - CSW01_17795 0.57 +0.1
666,948 - CSW01_17795 0.75 -0.1
666,949 + CSW01_17795 0.75 -0.8
666,954 + CSW01_17795 0.76 -0.5
666,992 + CSW01_17795 0.79 +0.3
667,088 + CSW01_17795 0.88 -0.4
667,240 + +1.3
667,245 + -0.2
667,269 + +0.6
667,277 - +0.3
667,335 - CSW01_17800 0.14 -0.9
667,369 + CSW01_17800 0.19 +0.1
667,443 + CSW01_17800 0.30 -0.3
667,496 + CSW01_17800 0.37 +0.7
667,504 - CSW01_17800 0.39 -0.3
667,539 + CSW01_17800 0.44 -2.6
667,539 + CSW01_17800 0.44 -0.1
667,539 + CSW01_17800 0.44 +0.5
667,539 + CSW01_17800 0.44 +0.3
667,539 + CSW01_17800 0.44 -1.0
667,541 + CSW01_17800 0.44 +0.1
667,547 - CSW01_17800 0.45 -1.1
667,547 - CSW01_17800 0.45 +0.0
667,547 - CSW01_17800 0.45 -0.4
667,547 - CSW01_17800 0.45 -0.3
667,547 - CSW01_17800 0.45 +0.1
667,547 - CSW01_17800 0.45 +0.1
667,547 - CSW01_17800 0.45 +0.1
667,549 - CSW01_17800 0.45 -0.5
667,596 - CSW01_17800 0.52 +0.5
667,610 + CSW01_17800 0.54 -0.3
667,610 + CSW01_17800 0.54 +2.0
667,618 - CSW01_17800 0.55 -1.3
667,649 - CSW01_17800 0.59 +0.2
667,831 + CSW01_17800 0.85 -0.5
667,858 + CSW01_17800 0.89 +0.5
667,866 - +0.4
667,881 + +0.3
667,889 - -0.4
667,889 - +0.1
667,925 + +0.5
668,128 - CSW01_17805 0.25 -1.6
668,216 + CSW01_17805 0.37 +0.8
668,216 + CSW01_17805 0.37 -0.3
668,216 + CSW01_17805 0.37 -0.5
668,219 - CSW01_17805 0.37 -0.8
668,220 + CSW01_17805 0.38 +0.1
668,224 - CSW01_17805 0.38 +0.8
668,260 + CSW01_17805 0.43 +0.3
668,345 - CSW01_17805 0.54 +0.3
668,379 - CSW01_17805 0.58 +0.9
668,427 - CSW01_17805 0.65 -1.0
668,427 - CSW01_17805 0.65 +0.2
668,546 + CSW01_17805 0.80 +0.5
668,551 + CSW01_17805 0.81 -0.4
668,559 - CSW01_17805 0.82 +0.5
668,564 - CSW01_17805 0.82 +0.6
668,564 - CSW01_17805 0.82 -1.1
668,564 - CSW01_17805 0.82 +0.0
668,588 + CSW01_17805 0.86 -1.4
668,646 - +1.0
668,693 + +0.1
668,775 + +0.3
668,775 + -1.5
668,775 + +0.8
668,783 - -0.3
668,783 - -0.4
668,783 - -0.8
668,783 - -0.4
668,810 + +0.4
668,810 + -0.2
668,890 + CSW01_17810 0.13 +0.5
668,894 - CSW01_17810 0.13 +0.3
668,912 - CSW01_17810 0.14 -0.4

Or see this region's nucleotide sequence