Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17795

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17790 and CSW01_17795 are separated by 98 nucleotidesCSW01_17795 and CSW01_17800 are separated by 13 nucleotidesCSW01_17800 and CSW01_17805 are separated by 0 nucleotides CSW01_17790: CSW01_17790 - 3-hydroxy-3-methylglutaryl-CoA reductase, at 664,711 to 666,021 _17790 CSW01_17795: CSW01_17795 - molybdenum import ATP-binding protein ModC, at 666,120 to 667,220 _17795 CSW01_17800: CSW01_17800 - molybdate ABC transporter permease subunit, at 667,234 to 667,932 _17800 CSW01_17805: CSW01_17805 - molybdate ABC transporter substrate-binding protein, at 667,933 to 668,697 _17805 Position (kb) 666 667 668Strain fitness (log2 ratio) -2 -1 0 1 2 3at 665.129 kb on + strand, within CSW01_17790at 665.154 kb on + strand, within CSW01_17790at 665.299 kb on - strand, within CSW01_17790at 665.301 kb on + strand, within CSW01_17790at 665.309 kb on - strand, within CSW01_17790at 665.309 kb on - strand, within CSW01_17790at 665.309 kb on - strand, within CSW01_17790at 665.470 kb on + strand, within CSW01_17790at 665.519 kb on + strand, within CSW01_17790at 665.614 kb on - strand, within CSW01_17790at 665.614 kb on - strand, within CSW01_17790at 665.698 kb on - strand, within CSW01_17790at 665.804 kb on + strand, within CSW01_17790at 665.812 kb on - strand, within CSW01_17790at 665.814 kb on + strand, within CSW01_17790at 665.873 kb on + strand, within CSW01_17790at 665.914 kb on + strandat 665.940 kb on + strandat 666.003 kb on + strandat 666.011 kb on - strandat 666.030 kb on - strandat 666.030 kb on - strandat 666.095 kb on - strandat 666.146 kb on + strandat 666.408 kb on + strand, within CSW01_17795at 666.513 kb on - strand, within CSW01_17795at 666.581 kb on + strand, within CSW01_17795at 666.581 kb on + strand, within CSW01_17795at 666.581 kb on + strand, within CSW01_17795at 666.581 kb on + strand, within CSW01_17795at 666.595 kb on + strand, within CSW01_17795at 666.596 kb on - strand, within CSW01_17795at 666.596 kb on - strand, within CSW01_17795at 666.613 kb on - strand, within CSW01_17795at 666.747 kb on - strand, within CSW01_17795at 666.948 kb on - strand, within CSW01_17795at 666.949 kb on + strand, within CSW01_17795at 666.954 kb on + strand, within CSW01_17795at 666.992 kb on + strand, within CSW01_17795at 667.088 kb on + strand, within CSW01_17795at 667.240 kb on + strandat 667.245 kb on + strandat 667.269 kb on + strandat 667.277 kb on - strandat 667.335 kb on - strand, within CSW01_17800at 667.369 kb on + strand, within CSW01_17800at 667.443 kb on + strand, within CSW01_17800at 667.496 kb on + strand, within CSW01_17800at 667.504 kb on - strand, within CSW01_17800at 667.539 kb on + strand, within CSW01_17800at 667.539 kb on + strand, within CSW01_17800at 667.539 kb on + strand, within CSW01_17800at 667.539 kb on + strand, within CSW01_17800at 667.539 kb on + strand, within CSW01_17800at 667.541 kb on + strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.547 kb on - strand, within CSW01_17800at 667.549 kb on - strand, within CSW01_17800at 667.596 kb on - strand, within CSW01_17800at 667.610 kb on + strand, within CSW01_17800at 667.610 kb on + strand, within CSW01_17800at 667.618 kb on - strand, within CSW01_17800at 667.649 kb on - strand, within CSW01_17800at 667.831 kb on + strand, within CSW01_17800at 667.858 kb on + strand, within CSW01_17800at 667.866 kb on - strandat 667.881 kb on + strandat 667.889 kb on - strandat 667.889 kb on - strandat 667.925 kb on + strandat 668.128 kb on - strand, within CSW01_17805at 668.216 kb on + strand, within CSW01_17805at 668.216 kb on + strand, within CSW01_17805at 668.216 kb on + strand, within CSW01_17805at 668.219 kb on - strand, within CSW01_17805at 668.220 kb on + strand, within CSW01_17805

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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665,129 + CSW01_17790 0.32 -0.8
665,154 + CSW01_17790 0.34 +0.3
665,299 - CSW01_17790 0.45 -1.2
665,301 + CSW01_17790 0.45 +0.6
665,309 - CSW01_17790 0.46 +0.3
665,309 - CSW01_17790 0.46 +0.0
665,309 - CSW01_17790 0.46 -0.6
665,470 + CSW01_17790 0.58 -0.5
665,519 + CSW01_17790 0.62 -0.0
665,614 - CSW01_17790 0.69 +0.2
665,614 - CSW01_17790 0.69 -1.2
665,698 - CSW01_17790 0.75 +2.3
665,804 + CSW01_17790 0.83 +0.4
665,812 - CSW01_17790 0.84 +1.3
665,814 + CSW01_17790 0.84 +0.3
665,873 + CSW01_17790 0.89 -0.3
665,914 + +0.0
665,940 + -1.1
666,003 + -0.1
666,011 - +0.0
666,030 - +1.9
666,030 - -1.1
666,095 - +0.0
666,146 + +0.6
666,408 + CSW01_17795 0.26 +0.0
666,513 - CSW01_17795 0.36 +1.6
666,581 + CSW01_17795 0.42 +1.3
666,581 + CSW01_17795 0.42 +3.1
666,581 + CSW01_17795 0.42 +1.0
666,581 + CSW01_17795 0.42 +0.0
666,595 + CSW01_17795 0.43 +0.8
666,596 - CSW01_17795 0.43 -0.6
666,596 - CSW01_17795 0.43 +0.0
666,613 - CSW01_17795 0.45 +0.6
666,747 - CSW01_17795 0.57 +0.1
666,948 - CSW01_17795 0.75 -0.1
666,949 + CSW01_17795 0.75 -0.8
666,954 + CSW01_17795 0.76 -0.5
666,992 + CSW01_17795 0.79 +0.3
667,088 + CSW01_17795 0.88 -0.4
667,240 + +1.3
667,245 + -0.2
667,269 + +0.6
667,277 - +0.3
667,335 - CSW01_17800 0.14 -0.9
667,369 + CSW01_17800 0.19 +0.1
667,443 + CSW01_17800 0.30 -0.3
667,496 + CSW01_17800 0.37 +0.7
667,504 - CSW01_17800 0.39 -0.3
667,539 + CSW01_17800 0.44 -2.6
667,539 + CSW01_17800 0.44 -0.1
667,539 + CSW01_17800 0.44 +0.5
667,539 + CSW01_17800 0.44 +0.3
667,539 + CSW01_17800 0.44 -1.0
667,541 + CSW01_17800 0.44 +0.1
667,547 - CSW01_17800 0.45 -1.1
667,547 - CSW01_17800 0.45 +0.0
667,547 - CSW01_17800 0.45 -0.4
667,547 - CSW01_17800 0.45 -0.3
667,547 - CSW01_17800 0.45 +0.1
667,547 - CSW01_17800 0.45 +0.1
667,547 - CSW01_17800 0.45 +0.1
667,549 - CSW01_17800 0.45 -0.5
667,596 - CSW01_17800 0.52 +0.5
667,610 + CSW01_17800 0.54 -0.3
667,610 + CSW01_17800 0.54 +2.0
667,618 - CSW01_17800 0.55 -1.3
667,649 - CSW01_17800 0.59 +0.2
667,831 + CSW01_17800 0.85 -0.5
667,858 + CSW01_17800 0.89 +0.5
667,866 - +0.4
667,881 + +0.3
667,889 - -0.4
667,889 - +0.1
667,925 + +0.5
668,128 - CSW01_17805 0.25 -1.6
668,216 + CSW01_17805 0.37 +0.8
668,216 + CSW01_17805 0.37 -0.3
668,216 + CSW01_17805 0.37 -0.5
668,219 - CSW01_17805 0.37 -0.8
668,220 + CSW01_17805 0.38 +0.1

Or see this region's nucleotide sequence