Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17495

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17490 and CSW01_17495 are separated by 346 nucleotidesCSW01_17495 and CSW01_17500 are separated by 101 nucleotides CSW01_17490: CSW01_17490 - aminoimidazole riboside kinase, at 589,808 to 590,779 _17490 CSW01_17495: CSW01_17495 - glycerol-3-phosphate dehydrogenase, at 591,126 to 592,664 _17495 CSW01_17500: CSW01_17500 - methyl-accepting chemotaxis protein, at 592,766 to 594,376 _17500 Position (kb) 591 592 593Strain fitness (log2 ratio) -2 -1 0 1at 590.233 kb on + strand, within CSW01_17490at 590.241 kb on - strand, within CSW01_17490at 590.265 kb on - strand, within CSW01_17490at 590.288 kb on - strand, within CSW01_17490at 590.397 kb on - strand, within CSW01_17490at 590.452 kb on + strand, within CSW01_17490at 590.452 kb on + strand, within CSW01_17490at 590.460 kb on - strand, within CSW01_17490at 590.461 kb on + strand, within CSW01_17490at 590.497 kb on - strand, within CSW01_17490at 590.508 kb on - strand, within CSW01_17490at 590.807 kb on + strandat 590.940 kb on - strandat 591.139 kb on + strandat 591.297 kb on - strand, within CSW01_17495at 591.297 kb on - strand, within CSW01_17495at 591.299 kb on + strand, within CSW01_17495at 591.309 kb on + strand, within CSW01_17495at 591.327 kb on - strand, within CSW01_17495at 591.327 kb on - strand, within CSW01_17495at 591.327 kb on - strand, within CSW01_17495at 591.397 kb on + strand, within CSW01_17495at 591.405 kb on - strand, within CSW01_17495at 591.659 kb on - strand, within CSW01_17495at 591.667 kb on - strand, within CSW01_17495at 591.784 kb on - strand, within CSW01_17495at 591.812 kb on + strand, within CSW01_17495at 591.812 kb on + strand, within CSW01_17495at 591.817 kb on + strand, within CSW01_17495at 591.887 kb on + strand, within CSW01_17495at 591.887 kb on + strand, within CSW01_17495at 591.889 kb on + strand, within CSW01_17495at 591.895 kb on - strand, within CSW01_17495at 591.895 kb on - strand, within CSW01_17495at 591.895 kb on - strand, within CSW01_17495at 592.153 kb on + strand, within CSW01_17495at 592.153 kb on + strand, within CSW01_17495at 592.153 kb on + strand, within CSW01_17495at 592.404 kb on + strand, within CSW01_17495at 592.480 kb on + strand, within CSW01_17495at 592.492 kb on + strand, within CSW01_17495at 592.498 kb on - strand, within CSW01_17495at 592.585 kb on + strandat 592.906 kb on + strandat 592.906 kb on + strandat 592.913 kb on + strandat 592.933 kb on + strand, within CSW01_17500at 592.974 kb on - strand, within CSW01_17500at 593.020 kb on + strand, within CSW01_17500at 593.068 kb on - strand, within CSW01_17500at 593.077 kb on + strand, within CSW01_17500at 593.077 kb on + strand, within CSW01_17500at 593.174 kb on + strand, within CSW01_17500at 593.179 kb on + strand, within CSW01_17500at 593.276 kb on - strand, within CSW01_17500at 593.305 kb on + strand, within CSW01_17500at 593.313 kb on - strand, within CSW01_17500at 593.313 kb on - strand, within CSW01_17500at 593.313 kb on - strand, within CSW01_17500at 593.323 kb on - strand, within CSW01_17500at 593.465 kb on + strand, within CSW01_17500at 593.473 kb on - strand, within CSW01_17500at 593.473 kb on - strand, within CSW01_17500at 593.555 kb on - strand, within CSW01_17500at 593.611 kb on - strand, within CSW01_17500

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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590,233 + CSW01_17490 0.44 -0.3
590,241 - CSW01_17490 0.45 -0.1
590,265 - CSW01_17490 0.47 +0.1
590,288 - CSW01_17490 0.49 -0.4
590,397 - CSW01_17490 0.61 -0.6
590,452 + CSW01_17490 0.66 +1.3
590,452 + CSW01_17490 0.66 -1.1
590,460 - CSW01_17490 0.67 -0.7
590,461 + CSW01_17490 0.67 +0.8
590,497 - CSW01_17490 0.71 +0.5
590,508 - CSW01_17490 0.72 -0.1
590,807 + +0.5
590,940 - -0.5
591,139 + +0.2
591,297 - CSW01_17495 0.11 -1.1
591,297 - CSW01_17495 0.11 +0.7
591,299 + CSW01_17495 0.11 +0.4
591,309 + CSW01_17495 0.12 -0.3
591,327 - CSW01_17495 0.13 +0.0
591,327 - CSW01_17495 0.13 +0.5
591,327 - CSW01_17495 0.13 -0.4
591,397 + CSW01_17495 0.18 +1.1
591,405 - CSW01_17495 0.18 -0.9
591,659 - CSW01_17495 0.35 -2.1
591,667 - CSW01_17495 0.35 +0.9
591,784 - CSW01_17495 0.43 -1.4
591,812 + CSW01_17495 0.45 -0.7
591,812 + CSW01_17495 0.45 +1.6
591,817 + CSW01_17495 0.45 -0.6
591,887 + CSW01_17495 0.49 -0.5
591,887 + CSW01_17495 0.49 -0.7
591,889 + CSW01_17495 0.50 -1.3
591,895 - CSW01_17495 0.50 -0.6
591,895 - CSW01_17495 0.50 -0.4
591,895 - CSW01_17495 0.50 -0.2
592,153 + CSW01_17495 0.67 +1.7
592,153 + CSW01_17495 0.67 +0.1
592,153 + CSW01_17495 0.67 -1.0
592,404 + CSW01_17495 0.83 +0.1
592,480 + CSW01_17495 0.88 -0.4
592,492 + CSW01_17495 0.89 +0.0
592,498 - CSW01_17495 0.89 +1.0
592,585 + +0.2
592,906 + +1.7
592,906 + -0.3
592,913 + +0.8
592,933 + CSW01_17500 0.10 +0.4
592,974 - CSW01_17500 0.13 -1.4
593,020 + CSW01_17500 0.16 -0.5
593,068 - CSW01_17500 0.19 +0.4
593,077 + CSW01_17500 0.19 +1.0
593,077 + CSW01_17500 0.19 +0.6
593,174 + CSW01_17500 0.25 +0.2
593,179 + CSW01_17500 0.26 -0.2
593,276 - CSW01_17500 0.32 +1.4
593,305 + CSW01_17500 0.33 -0.5
593,313 - CSW01_17500 0.34 -0.8
593,313 - CSW01_17500 0.34 -0.1
593,313 - CSW01_17500 0.34 +0.6
593,323 - CSW01_17500 0.35 +0.0
593,465 + CSW01_17500 0.43 -1.1
593,473 - CSW01_17500 0.44 +0.5
593,473 - CSW01_17500 0.44 -1.2
593,555 - CSW01_17500 0.49 +1.1
593,611 - CSW01_17500 0.52 +0.1

Or see this region's nucleotide sequence