Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16475

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16455 and CSW01_16460 overlap by 10 nucleotidesCSW01_16460 and CSW01_16465 are separated by 83 nucleotidesCSW01_16465 and CSW01_16470 overlap by 49 nucleotidesCSW01_16470 and CSW01_16475 are separated by 322 nucleotidesCSW01_16475 and CSW01_16480 are separated by 146 nucleotides CSW01_16455: CSW01_16455 - DJ-1/PfpI family protein, at 404,566 to 405,162 _16455 CSW01_16460: CSW01_16460 - acetyltransferase, at 405,153 to 405,290 _16460 CSW01_16465: CSW01_16465 - general secretion pathway protein GspH, at 405,374 to 405,514 _16465 CSW01_16470: CSW01_16470 - DUF645 domain-containing protein, at 405,466 to 405,636 _16470 CSW01_16475: CSW01_16475 - hypothetical protein, at 405,959 to 406,573 _16475 CSW01_16480: CSW01_16480 - DUF2806 domain-containing protein, at 406,720 to 407,577 _16480 Position (kb) 405 406 407Strain fitness (log2 ratio) -2 -1 0 1 2 3at 404.974 kb on + strand, within CSW01_16455at 405.023 kb on + strand, within CSW01_16455at 405.030 kb on + strand, within CSW01_16455at 405.109 kb on - strandat 405.144 kb on - strandat 405.191 kb on - strand, within CSW01_16460at 405.196 kb on - strand, within CSW01_16460at 405.560 kb on - strand, within CSW01_16470at 405.565 kb on - strand, within CSW01_16470at 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on - strandat 405.883 kb on - strandat 405.883 kb on - strandat 405.883 kb on - strandat 405.890 kb on - strandat 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.135 kb on - strand, within CSW01_16475at 406.135 kb on - strand, within CSW01_16475at 406.173 kb on + strand, within CSW01_16475at 406.181 kb on - strand, within CSW01_16475at 406.181 kb on - strand, within CSW01_16475at 406.209 kb on + strand, within CSW01_16475at 406.209 kb on + strand, within CSW01_16475at 406.217 kb on - strand, within CSW01_16475at 406.221 kb on + strand, within CSW01_16475at 406.229 kb on + strand, within CSW01_16475at 406.229 kb on - strand, within CSW01_16475at 406.264 kb on + strand, within CSW01_16475at 406.274 kb on + strand, within CSW01_16475at 406.275 kb on + strand, within CSW01_16475at 406.282 kb on - strand, within CSW01_16475at 406.307 kb on + strand, within CSW01_16475at 406.308 kb on + strand, within CSW01_16475at 406.318 kb on + strand, within CSW01_16475at 406.365 kb on + strand, within CSW01_16475at 406.582 kb on - strandat 406.582 kb on - strandat 406.594 kb on - strandat 406.594 kb on - strandat 406.626 kb on + strandat 406.634 kb on - strandat 406.634 kb on - strandat 406.634 kb on - strandat 406.639 kb on - strandat 406.641 kb on - strandat 406.661 kb on + strandat 406.661 kb on + strandat 406.667 kb on - strandat 406.669 kb on - strandat 406.669 kb on - strandat 406.669 kb on - strandat 406.676 kb on + strandat 406.677 kb on - strandat 406.684 kb on + strandat 406.684 kb on + strandat 406.694 kb on + strandat 406.788 kb on + strandat 406.818 kb on + strand, within CSW01_16480at 406.818 kb on + strand, within CSW01_16480at 406.859 kb on - strand, within CSW01_16480at 406.859 kb on - strand, within CSW01_16480at 406.891 kb on - strand, within CSW01_16480at 406.908 kb on - strand, within CSW01_16480at 407.024 kb on - strand, within CSW01_16480at 407.025 kb on + strand, within CSW01_16480at 407.025 kb on + strand, within CSW01_16480at 407.025 kb on + strand, within CSW01_16480at 407.033 kb on - strand, within CSW01_16480at 407.033 kb on - strand, within CSW01_16480at 407.035 kb on + strand, within CSW01_16480at 407.084 kb on + strand, within CSW01_16480at 407.159 kb on + strand, within CSW01_16480at 407.161 kb on + strand, within CSW01_16480at 407.177 kb on + strand, within CSW01_16480at 407.217 kb on + strand, within CSW01_16480at 407.217 kb on + strand, within CSW01_16480at 407.217 kb on + strand, within CSW01_16480at 407.233 kb on - strand, within CSW01_16480at 407.314 kb on + strand, within CSW01_16480at 407.314 kb on + strand, within CSW01_16480at 407.374 kb on + strand, within CSW01_16480at 407.492 kb on + strandat 407.549 kb on + strandat 407.556 kb on - strandat 407.557 kb on - strandat 407.557 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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404,974 + CSW01_16455 0.68 -0.3
405,023 + CSW01_16455 0.77 -0.2
405,030 + CSW01_16455 0.78 -0.5
405,109 - -0.4
405,144 - +0.4
405,191 - CSW01_16460 0.28 +0.4
405,196 - CSW01_16460 0.31 +0.1
405,560 - CSW01_16470 0.55 -0.4
405,565 - CSW01_16470 0.58 -0.1
405,875 + -0.4
405,875 + -2.3
405,875 + -0.6
405,875 + -0.1
405,875 + +0.2
405,875 + -0.6
405,875 - +0.6
405,883 - -0.9
405,883 - +0.6
405,883 - -0.8
405,890 - +0.7
406,127 + CSW01_16475 0.27 -0.6
406,127 + CSW01_16475 0.27 -1.3
406,127 + CSW01_16475 0.27 +0.1
406,127 + CSW01_16475 0.27 +0.4
406,127 + CSW01_16475 0.27 -0.3
406,127 + CSW01_16475 0.27 +0.2
406,127 + CSW01_16475 0.27 -1.1
406,127 + CSW01_16475 0.27 +0.9
406,127 + CSW01_16475 0.27 +0.2
406,127 + CSW01_16475 0.27 -0.4
406,135 - CSW01_16475 0.29 +1.0
406,135 - CSW01_16475 0.29 -0.8
406,173 + CSW01_16475 0.35 +0.4
406,181 - CSW01_16475 0.36 +0.1
406,181 - CSW01_16475 0.36 +0.1
406,209 + CSW01_16475 0.41 +0.5
406,209 + CSW01_16475 0.41 +0.3
406,217 - CSW01_16475 0.42 +0.1
406,221 + CSW01_16475 0.43 -0.1
406,229 + CSW01_16475 0.44 -0.0
406,229 - CSW01_16475 0.44 +0.5
406,264 + CSW01_16475 0.50 -0.9
406,274 + CSW01_16475 0.51 +0.3
406,275 + CSW01_16475 0.51 -1.1
406,282 - CSW01_16475 0.53 -0.3
406,307 + CSW01_16475 0.57 -0.2
406,308 + CSW01_16475 0.57 +0.2
406,318 + CSW01_16475 0.58 -0.5
406,365 + CSW01_16475 0.66 -0.2
406,582 - +0.5
406,582 - +0.1
406,594 - -1.5
406,594 - -0.0
406,626 + +0.4
406,634 - -0.5
406,634 - +0.1
406,634 - -0.2
406,639 - +0.5
406,641 - +0.3
406,661 + -0.4
406,661 + +1.2
406,667 - -0.8
406,669 - +3.5
406,669 - +0.1
406,669 - -0.9
406,676 + -1.1
406,677 - +0.0
406,684 + +1.2
406,684 + -0.0
406,694 + -0.7
406,788 + -0.2
406,818 + CSW01_16480 0.11 -0.5
406,818 + CSW01_16480 0.11 +0.2
406,859 - CSW01_16480 0.16 +0.7
406,859 - CSW01_16480 0.16 +2.8
406,891 - CSW01_16480 0.20 +0.9
406,908 - CSW01_16480 0.22 +0.1
407,024 - CSW01_16480 0.35 -1.4
407,025 + CSW01_16480 0.36 +0.1
407,025 + CSW01_16480 0.36 +0.2
407,025 + CSW01_16480 0.36 +0.4
407,033 - CSW01_16480 0.36 -0.6
407,033 - CSW01_16480 0.36 -1.2
407,035 + CSW01_16480 0.37 -1.4
407,084 + CSW01_16480 0.42 -0.2
407,159 + CSW01_16480 0.51 -0.2
407,161 + CSW01_16480 0.51 +0.4
407,177 + CSW01_16480 0.53 +0.2
407,217 + CSW01_16480 0.58 +0.4
407,217 + CSW01_16480 0.58 +0.2
407,217 + CSW01_16480 0.58 -0.2
407,233 - CSW01_16480 0.60 -1.2
407,314 + CSW01_16480 0.69 -0.2
407,314 + CSW01_16480 0.69 +0.1
407,374 + CSW01_16480 0.76 -0.3
407,492 + -1.6
407,549 + +0.8
407,556 - +0.1
407,557 - +0.3
407,557 - -0.0

Or see this region's nucleotide sequence