Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15110

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15105 and CSW01_15110 are separated by 315 nucleotidesCSW01_15110 and CSW01_15115 are separated by 52 nucleotidesCSW01_15115 and CSW01_15120 overlap by 11 nucleotides CSW01_15105: CSW01_15105 - class II glutamine amidotransferase, at 247,681 to 248,445 _15105 CSW01_15110: CSW01_15110 - iron(III) ABC transporter substrate-binding protein, at 248,761 to 249,762 _15110 CSW01_15115: CSW01_15115 - iron(III) ABC transporter permease, at 249,815 to 250,753 _15115 CSW01_15120: CSW01_15120 - iron(III) ABC transporter permease, at 250,743 to 251,693 _15120 Position (kb) 248 249 250Strain fitness (log2 ratio) -2 -1 0 1at 247.772 kb on + strand, within CSW01_15105at 247.772 kb on + strand, within CSW01_15105at 247.780 kb on - strand, within CSW01_15105at 247.780 kb on - strand, within CSW01_15105at 247.790 kb on - strand, within CSW01_15105at 247.833 kb on - strand, within CSW01_15105at 247.875 kb on - strand, within CSW01_15105at 247.936 kb on - strand, within CSW01_15105at 247.974 kb on - strand, within CSW01_15105at 248.010 kb on - strand, within CSW01_15105at 248.045 kb on - strand, within CSW01_15105at 248.208 kb on - strand, within CSW01_15105at 248.224 kb on + strand, within CSW01_15105at 248.276 kb on - strand, within CSW01_15105at 248.296 kb on - strand, within CSW01_15105at 248.420 kb on - strandat 248.420 kb on - strandat 248.426 kb on - strandat 248.449 kb on + strandat 248.460 kb on + strandat 248.460 kb on + strandat 248.751 kb on - strandat 248.751 kb on - strandat 248.753 kb on - strandat 248.793 kb on - strandat 248.793 kb on - strandat 248.793 kb on - strandat 248.929 kb on - strand, within CSW01_15110at 248.929 kb on - strand, within CSW01_15110at 248.938 kb on + strand, within CSW01_15110at 248.970 kb on - strand, within CSW01_15110at 249.254 kb on + strand, within CSW01_15110at 249.518 kb on + strand, within CSW01_15110at 249.531 kb on - strand, within CSW01_15110at 249.627 kb on + strand, within CSW01_15110at 249.980 kb on + strand, within CSW01_15115at 249.980 kb on + strand, within CSW01_15115at 249.988 kb on - strand, within CSW01_15115at 250.072 kb on + strand, within CSW01_15115at 250.082 kb on - strand, within CSW01_15115at 250.106 kb on + strand, within CSW01_15115at 250.251 kb on + strand, within CSW01_15115at 250.251 kb on + strand, within CSW01_15115at 250.329 kb on - strand, within CSW01_15115at 250.342 kb on + strand, within CSW01_15115at 250.342 kb on + strand, within CSW01_15115at 250.342 kb on + strand, within CSW01_15115at 250.342 kb on + strand, within CSW01_15115at 250.486 kb on - strand, within CSW01_15115at 250.509 kb on - strand, within CSW01_15115at 250.743 kb on + strandat 250.743 kb on + strandat 250.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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247,772 + CSW01_15105 0.12 +0.4
247,772 + CSW01_15105 0.12 -1.0
247,780 - CSW01_15105 0.13 +0.6
247,780 - CSW01_15105 0.13 +0.5
247,790 - CSW01_15105 0.14 +0.9
247,833 - CSW01_15105 0.20 +0.4
247,875 - CSW01_15105 0.25 -1.4
247,936 - CSW01_15105 0.33 -1.0
247,974 - CSW01_15105 0.38 -0.0
248,010 - CSW01_15105 0.43 -1.5
248,045 - CSW01_15105 0.48 +0.1
248,208 - CSW01_15105 0.69 -0.3
248,224 + CSW01_15105 0.71 +0.0
248,276 - CSW01_15105 0.78 -0.1
248,296 - CSW01_15105 0.80 +0.6
248,420 - +0.3
248,420 - +1.5
248,426 - -0.9
248,449 + +0.1
248,460 + +0.1
248,460 + -0.3
248,751 - -0.9
248,751 - -0.6
248,753 - +0.6
248,793 - +0.1
248,793 - +0.6
248,793 - +0.8
248,929 - CSW01_15110 0.17 +0.5
248,929 - CSW01_15110 0.17 +0.5
248,938 + CSW01_15110 0.18 +0.9
248,970 - CSW01_15110 0.21 -0.9
249,254 + CSW01_15110 0.49 -0.5
249,518 + CSW01_15110 0.76 -0.4
249,531 - CSW01_15110 0.77 +0.3
249,627 + CSW01_15110 0.86 -0.5
249,980 + CSW01_15115 0.18 +0.6
249,980 + CSW01_15115 0.18 +0.4
249,988 - CSW01_15115 0.18 +0.6
250,072 + CSW01_15115 0.27 +0.5
250,082 - CSW01_15115 0.28 -0.4
250,106 + CSW01_15115 0.31 -1.0
250,251 + CSW01_15115 0.46 -0.4
250,251 + CSW01_15115 0.46 +0.1
250,329 - CSW01_15115 0.55 +1.4
250,342 + CSW01_15115 0.56 +0.0
250,342 + CSW01_15115 0.56 -2.5
250,342 + CSW01_15115 0.56 -0.1
250,342 + CSW01_15115 0.56 +0.0
250,486 - CSW01_15115 0.71 -0.0
250,509 - CSW01_15115 0.74 -0.7
250,743 + -0.5
250,743 + +0.5
250,751 - +0.6

Or see this region's nucleotide sequence