Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14810

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14805 and CSW01_14810 are separated by 471 nucleotidesCSW01_14810 and CSW01_14815 are separated by 237 nucleotidesCSW01_14815 and CSW01_14820 are separated by 69 nucleotides CSW01_14805: CSW01_14805 - tryptophanase, at 178,504 to 179,922 _14805 CSW01_14810: CSW01_14810 - tryptophanase leader peptide, at 180,394 to 180,465 _14810 CSW01_14815: CSW01_14815 - hypothetical protein, at 180,703 to 180,915 _14815 CSW01_14820: CSW01_14820 - hypothetical protein, at 180,985 to 181,467 _14820 Position (kb) 180 181Strain fitness (log2 ratio) -2 -1 0 1at 179.477 kb on + strand, within CSW01_14805at 179.500 kb on + strand, within CSW01_14805at 179.500 kb on + strand, within CSW01_14805at 179.508 kb on - strand, within CSW01_14805at 179.594 kb on + strand, within CSW01_14805at 179.604 kb on + strand, within CSW01_14805at 179.612 kb on - strand, within CSW01_14805at 179.666 kb on + strand, within CSW01_14805at 179.698 kb on + strand, within CSW01_14805at 179.706 kb on - strand, within CSW01_14805at 179.707 kb on - strand, within CSW01_14805at 179.714 kb on + strand, within CSW01_14805at 179.756 kb on + strand, within CSW01_14805at 179.756 kb on + strand, within CSW01_14805at 179.764 kb on - strand, within CSW01_14805at 179.775 kb on + strand, within CSW01_14805at 179.775 kb on + strand, within CSW01_14805at 179.790 kb on + strandat 179.795 kb on - strandat 179.810 kb on + strandat 179.819 kb on - strandat 179.847 kb on + strandat 179.855 kb on - strandat 179.860 kb on + strandat 179.860 kb on - strandat 179.868 kb on - strandat 180.050 kb on - strandat 180.096 kb on + strandat 180.163 kb on + strandat 180.163 kb on + strandat 180.168 kb on + strandat 180.176 kb on - strandat 180.176 kb on - strandat 180.178 kb on - strandat 180.178 kb on - strandat 180.179 kb on + strandat 180.179 kb on + strandat 180.194 kb on + strandat 180.197 kb on - strandat 180.203 kb on - strandat 180.256 kb on + strandat 180.258 kb on - strandat 180.264 kb on - strandat 180.282 kb on + strandat 180.284 kb on + strandat 180.284 kb on + strandat 180.291 kb on - strandat 180.293 kb on + strandat 180.293 kb on - strandat 180.319 kb on + strandat 180.391 kb on + strandat 180.391 kb on + strandat 180.429 kb on + strand, within CSW01_14810at 180.429 kb on + strand, within CSW01_14810at 180.437 kb on - strand, within CSW01_14810at 180.437 kb on - strand, within CSW01_14810at 180.437 kb on - strand, within CSW01_14810at 180.448 kb on + strand, within CSW01_14810at 180.451 kb on - strand, within CSW01_14810at 180.527 kb on + strandat 180.603 kb on - strandat 180.652 kb on + strandat 180.652 kb on + strandat 180.658 kb on + strandat 180.658 kb on + strandat 180.658 kb on + strandat 180.658 kb on + strandat 180.658 kb on + strandat 180.658 kb on + strandat 180.658 kb on + strandat 180.662 kb on - strandat 180.663 kb on + strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.697 kb on - strandat 180.766 kb on + strand, within CSW01_14815at 180.786 kb on + strand, within CSW01_14815at 180.855 kb on + strand, within CSW01_14815at 180.863 kb on - strand, within CSW01_14815at 180.888 kb on - strand, within CSW01_14815at 180.901 kb on + strandat 180.923 kb on + strandat 180.949 kb on + strandat 180.949 kb on + strandat 180.949 kb on + strandat 180.957 kb on - strandat 180.957 kb on - strandat 180.957 kb on - strandat 181.008 kb on - strandat 181.102 kb on - strand, within CSW01_14820at 181.160 kb on - strand, within CSW01_14820at 181.160 kb on - strand, within CSW01_14820at 181.173 kb on - strand, within CSW01_14820at 181.225 kb on - strand, within CSW01_14820at 181.263 kb on + strand, within CSW01_14820at 181.263 kb on + strand, within CSW01_14820at 181.263 kb on + strand, within CSW01_14820at 181.268 kb on + strand, within CSW01_14820at 181.271 kb on - strand, within CSW01_14820at 181.271 kb on - strand, within CSW01_14820at 181.271 kb on - strand, within CSW01_14820at 181.293 kb on + strand, within CSW01_14820at 181.301 kb on - strand, within CSW01_14820at 181.352 kb on + strand, within CSW01_14820at 181.363 kb on + strand, within CSW01_14820at 181.420 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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179,477 + CSW01_14805 0.69 -0.3
179,500 + CSW01_14805 0.70 -0.6
179,500 + CSW01_14805 0.70 +0.8
179,508 - CSW01_14805 0.71 +0.7
179,594 + CSW01_14805 0.77 +0.2
179,604 + CSW01_14805 0.78 -0.0
179,612 - CSW01_14805 0.78 +0.4
179,666 + CSW01_14805 0.82 +0.4
179,698 + CSW01_14805 0.84 -0.9
179,706 - CSW01_14805 0.85 -0.5
179,707 - CSW01_14805 0.85 +1.0
179,714 + CSW01_14805 0.85 +0.7
179,756 + CSW01_14805 0.88 -0.0
179,756 + CSW01_14805 0.88 -1.3
179,764 - CSW01_14805 0.89 +0.4
179,775 + CSW01_14805 0.90 -0.2
179,775 + CSW01_14805 0.90 -0.2
179,790 + -1.2
179,795 - -0.7
179,810 + -0.1
179,819 - +0.4
179,847 + +0.3
179,855 - -0.5
179,860 + +0.5
179,860 - +0.3
179,868 - +0.0
180,050 - -0.2
180,096 + -0.4
180,163 + +0.1
180,163 + +0.7
180,168 + +1.0
180,176 - +0.3
180,176 - -0.5
180,178 - -0.1
180,178 - +0.5
180,179 + +0.4
180,179 + -0.3
180,194 + +0.7
180,197 - +0.5
180,203 - +0.4
180,256 + +0.2
180,258 - -0.7
180,264 - -0.5
180,282 + +0.1
180,284 + +0.3
180,284 + +0.3
180,291 - +1.1
180,293 + +0.2
180,293 - +0.8
180,319 + -0.0
180,391 + +0.0
180,391 + -0.6
180,429 + CSW01_14810 0.49 +0.1
180,429 + CSW01_14810 0.49 -1.2
180,437 - CSW01_14810 0.60 -0.8
180,437 - CSW01_14810 0.60 -0.6
180,437 - CSW01_14810 0.60 -2.0
180,448 + CSW01_14810 0.75 +0.1
180,451 - CSW01_14810 0.79 -0.2
180,527 + +0.5
180,603 - +0.8
180,652 + +0.2
180,652 + +0.5
180,658 + +0.9
180,658 + +0.1
180,658 + +0.4
180,658 + -1.3
180,658 + +0.9
180,658 + +0.2
180,658 + -0.5
180,662 - -0.9
180,663 + +0.8
180,666 - +0.7
180,666 - +0.3
180,666 - +0.4
180,666 - +0.1
180,666 - +0.2
180,666 - -0.4
180,666 - +0.1
180,666 - -0.1
180,697 - +0.3
180,766 + CSW01_14815 0.30 +0.5
180,786 + CSW01_14815 0.39 +0.0
180,855 + CSW01_14815 0.71 -1.9
180,863 - CSW01_14815 0.75 -0.4
180,888 - CSW01_14815 0.87 -0.9
180,901 + -0.9
180,923 + +0.5
180,949 + -0.2
180,949 + +0.3
180,949 + +0.8
180,957 - +0.5
180,957 - +0.4
180,957 - +0.2
181,008 - +0.1
181,102 - CSW01_14820 0.24 +0.3
181,160 - CSW01_14820 0.36 -0.0
181,160 - CSW01_14820 0.36 +0.8
181,173 - CSW01_14820 0.39 -0.8
181,225 - CSW01_14820 0.50 +0.4
181,263 + CSW01_14820 0.58 -0.5
181,263 + CSW01_14820 0.58 -0.6
181,263 + CSW01_14820 0.58 +0.5
181,268 + CSW01_14820 0.59 +0.6
181,271 - CSW01_14820 0.59 +0.3
181,271 - CSW01_14820 0.59 -0.1
181,271 - CSW01_14820 0.59 -0.7
181,293 + CSW01_14820 0.64 +0.6
181,301 - CSW01_14820 0.65 -2.2
181,352 + CSW01_14820 0.76 -0.4
181,363 + CSW01_14820 0.78 +0.0
181,420 - +0.8

Or see this region's nucleotide sequence