Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14425

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14420 and CSW01_14425 are separated by 117 nucleotidesCSW01_14425 and CSW01_14430 are separated by 222 nucleotides CSW01_14420: CSW01_14420 - peptidase M23, at 89,147 to 90,439 _14420 CSW01_14425: CSW01_14425 - GGDEF domain-containing protein, at 90,557 to 92,380 _14425 CSW01_14430: CSW01_14430 - LysR family transcriptional regulator, at 92,603 to 93,490 _14430 Position (kb) 90 91 92 93Strain fitness (log2 ratio) -2 -1 0 1 2at 89.576 kb on + strand, within CSW01_14420at 89.584 kb on - strand, within CSW01_14420at 89.908 kb on + strand, within CSW01_14420at 90.010 kb on - strand, within CSW01_14420at 90.071 kb on + strand, within CSW01_14420at 90.071 kb on + strand, within CSW01_14420at 90.071 kb on + strand, within CSW01_14420at 90.081 kb on + strand, within CSW01_14420at 90.176 kb on + strand, within CSW01_14420at 90.350 kb on - strandat 90.378 kb on - strandat 90.400 kb on + strandat 90.602 kb on + strandat 90.660 kb on + strandat 90.668 kb on - strandat 90.682 kb on + strandat 90.774 kb on + strand, within CSW01_14425at 90.842 kb on + strand, within CSW01_14425at 90.846 kb on - strand, within CSW01_14425at 90.924 kb on + strand, within CSW01_14425at 90.924 kb on + strand, within CSW01_14425at 90.924 kb on + strand, within CSW01_14425at 90.932 kb on - strand, within CSW01_14425at 90.952 kb on + strand, within CSW01_14425at 90.960 kb on - strand, within CSW01_14425at 91.158 kb on - strand, within CSW01_14425at 91.278 kb on + strand, within CSW01_14425at 91.286 kb on - strand, within CSW01_14425at 91.286 kb on - strand, within CSW01_14425at 91.286 kb on - strand, within CSW01_14425at 91.286 kb on - strand, within CSW01_14425at 91.313 kb on - strand, within CSW01_14425at 91.455 kb on + strand, within CSW01_14425at 91.483 kb on - strand, within CSW01_14425at 91.486 kb on + strand, within CSW01_14425at 91.535 kb on - strand, within CSW01_14425at 91.576 kb on + strand, within CSW01_14425at 91.633 kb on - strand, within CSW01_14425at 91.697 kb on - strand, within CSW01_14425at 91.750 kb on + strand, within CSW01_14425at 91.753 kb on - strand, within CSW01_14425at 92.145 kb on + strand, within CSW01_14425at 92.170 kb on + strand, within CSW01_14425at 92.170 kb on + strand, within CSW01_14425at 92.170 kb on + strand, within CSW01_14425at 92.170 kb on + strand, within CSW01_14425at 92.178 kb on - strand, within CSW01_14425at 92.178 kb on - strand, within CSW01_14425at 92.178 kb on - strand, within CSW01_14425at 92.178 kb on - strand, within CSW01_14425at 92.178 kb on - strand, within CSW01_14425at 92.178 kb on - strand, within CSW01_14425at 92.252 kb on + strandat 92.752 kb on + strand, within CSW01_14430at 92.752 kb on + strand, within CSW01_14430at 92.814 kb on + strand, within CSW01_14430at 92.840 kb on - strand, within CSW01_14430at 92.910 kb on + strand, within CSW01_14430at 92.910 kb on + strand, within CSW01_14430at 92.910 kb on + strand, within CSW01_14430at 92.915 kb on + strand, within CSW01_14430at 92.923 kb on - strand, within CSW01_14430at 92.923 kb on - strand, within CSW01_14430at 92.932 kb on - strand, within CSW01_14430at 93.060 kb on - strand, within CSW01_14430at 93.081 kb on - strand, within CSW01_14430at 93.138 kb on - strand, within CSW01_14430at 93.217 kb on - strand, within CSW01_14430at 93.217 kb on - strand, within CSW01_14430at 93.217 kb on - strand, within CSW01_14430

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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89,576 + CSW01_14420 0.33 -0.4
89,584 - CSW01_14420 0.34 -0.3
89,908 + CSW01_14420 0.59 +0.4
90,010 - CSW01_14420 0.67 +0.4
90,071 + CSW01_14420 0.71 -0.8
90,071 + CSW01_14420 0.71 -0.2
90,071 + CSW01_14420 0.71 -0.7
90,081 + CSW01_14420 0.72 +0.9
90,176 + CSW01_14420 0.80 +0.9
90,350 - -0.2
90,378 - +0.1
90,400 + +0.5
90,602 + -0.8
90,660 + -0.3
90,668 - +0.4
90,682 + +0.6
90,774 + CSW01_14425 0.12 +0.6
90,842 + CSW01_14425 0.16 -0.2
90,846 - CSW01_14425 0.16 +0.5
90,924 + CSW01_14425 0.20 +0.1
90,924 + CSW01_14425 0.20 -0.5
90,924 + CSW01_14425 0.20 -0.5
90,932 - CSW01_14425 0.21 +0.0
90,952 + CSW01_14425 0.22 -1.3
90,960 - CSW01_14425 0.22 +0.8
91,158 - CSW01_14425 0.33 -0.1
91,278 + CSW01_14425 0.40 -1.7
91,286 - CSW01_14425 0.40 -0.2
91,286 - CSW01_14425 0.40 -0.9
91,286 - CSW01_14425 0.40 -1.7
91,286 - CSW01_14425 0.40 +1.8
91,313 - CSW01_14425 0.41 -0.3
91,455 + CSW01_14425 0.49 +0.1
91,483 - CSW01_14425 0.51 +0.7
91,486 + CSW01_14425 0.51 -0.9
91,535 - CSW01_14425 0.54 +0.3
91,576 + CSW01_14425 0.56 -0.3
91,633 - CSW01_14425 0.59 -0.2
91,697 - CSW01_14425 0.62 -0.3
91,750 + CSW01_14425 0.65 -0.3
91,753 - CSW01_14425 0.66 +0.1
92,145 + CSW01_14425 0.87 -0.1
92,170 + CSW01_14425 0.88 +0.3
92,170 + CSW01_14425 0.88 -2.0
92,170 + CSW01_14425 0.88 +0.7
92,170 + CSW01_14425 0.88 +0.3
92,178 - CSW01_14425 0.89 +0.8
92,178 - CSW01_14425 0.89 -0.2
92,178 - CSW01_14425 0.89 +0.3
92,178 - CSW01_14425 0.89 +0.2
92,178 - CSW01_14425 0.89 -0.1
92,178 - CSW01_14425 0.89 +0.0
92,252 + +1.1
92,752 + CSW01_14430 0.17 +0.6
92,752 + CSW01_14430 0.17 -0.7
92,814 + CSW01_14430 0.24 -0.2
92,840 - CSW01_14430 0.27 +0.4
92,910 + CSW01_14430 0.35 -1.3
92,910 + CSW01_14430 0.35 +0.1
92,910 + CSW01_14430 0.35 -0.0
92,915 + CSW01_14430 0.35 +0.9
92,923 - CSW01_14430 0.36 +0.6
92,923 - CSW01_14430 0.36 +0.3
92,932 - CSW01_14430 0.37 +0.2
93,060 - CSW01_14430 0.51 -0.9
93,081 - CSW01_14430 0.54 +0.5
93,138 - CSW01_14430 0.60 -0.9
93,217 - CSW01_14430 0.69 +0.1
93,217 - CSW01_14430 0.69 -0.1
93,217 - CSW01_14430 0.69 -0.4

Or see this region's nucleotide sequence