Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14390

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14380 and CSW01_14385 are separated by 4 nucleotidesCSW01_14385 and CSW01_14390 are separated by 46 nucleotidesCSW01_14390 and CSW01_14395 overlap by 4 nucleotidesCSW01_14395 and CSW01_14400 overlap by 62 nucleotidesCSW01_14400 and CSW01_14405 are separated by 163 nucleotides CSW01_14380: CSW01_14380 - phosphate ABC transporter, permease protein PstA, at 81,297 to 82,160 _14380 CSW01_14385: CSW01_14385 - phosphate ABC transporter ATP-binding protein, at 82,165 to 82,944 _14385 CSW01_14390: CSW01_14390 - GGDEF domain-containing protein, at 82,991 to 84,091 _14390 CSW01_14395: CSW01_14395 - oxidoreductase, at 84,088 to 84,555 _14395 CSW01_14400: CSW01_14400 - hypothetical protein, at 84,494 to 84,682 _14400 CSW01_14405: CSW01_14405 - hypothetical protein, at 84,846 to 86,222 _14405 Position (kb) 82 83 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 81.991 kb on + strand, within CSW01_14380at 82.001 kb on + strand, within CSW01_14380at 82.003 kb on + strand, within CSW01_14380at 82.009 kb on - strand, within CSW01_14380at 82.038 kb on - strand, within CSW01_14380at 82.038 kb on - strand, within CSW01_14380at 82.091 kb on - strandat 82.124 kb on + strandat 82.227 kb on + strandat 82.227 kb on + strandat 82.235 kb on - strandat 82.287 kb on - strand, within CSW01_14385at 82.291 kb on + strand, within CSW01_14385at 82.299 kb on - strand, within CSW01_14385at 82.312 kb on - strand, within CSW01_14385at 82.359 kb on + strand, within CSW01_14385at 82.359 kb on + strand, within CSW01_14385at 82.359 kb on + strand, within CSW01_14385at 82.389 kb on + strand, within CSW01_14385at 82.416 kb on - strand, within CSW01_14385at 82.435 kb on - strand, within CSW01_14385at 82.570 kb on + strand, within CSW01_14385at 82.572 kb on + strand, within CSW01_14385at 82.577 kb on + strand, within CSW01_14385at 82.577 kb on + strand, within CSW01_14385at 82.577 kb on + strand, within CSW01_14385at 82.577 kb on + strand, within CSW01_14385at 82.580 kb on - strand, within CSW01_14385at 82.582 kb on + strand, within CSW01_14385at 82.668 kb on + strand, within CSW01_14385at 82.742 kb on + strand, within CSW01_14385at 82.781 kb on - strand, within CSW01_14385at 82.781 kb on - strand, within CSW01_14385at 82.781 kb on - strand, within CSW01_14385at 82.799 kb on + strand, within CSW01_14385at 82.856 kb on + strand, within CSW01_14385at 82.914 kb on - strandat 82.965 kb on + strandat 82.989 kb on - strandat 83.083 kb on + strandat 83.083 kb on + strandat 83.088 kb on + strandat 83.088 kb on + strandat 83.091 kb on - strandat 83.183 kb on + strand, within CSW01_14390at 83.205 kb on - strand, within CSW01_14390at 83.207 kb on + strand, within CSW01_14390at 83.207 kb on + strand, within CSW01_14390at 83.215 kb on - strand, within CSW01_14390at 83.215 kb on - strand, within CSW01_14390at 83.294 kb on - strand, within CSW01_14390at 83.422 kb on - strand, within CSW01_14390at 83.442 kb on + strand, within CSW01_14390at 83.457 kb on - strand, within CSW01_14390at 83.459 kb on + strand, within CSW01_14390at 83.459 kb on + strand, within CSW01_14390at 83.459 kb on + strand, within CSW01_14390at 83.459 kb on + strand, within CSW01_14390at 83.466 kb on + strand, within CSW01_14390at 83.467 kb on - strand, within CSW01_14390at 83.467 kb on - strand, within CSW01_14390at 83.467 kb on - strand, within CSW01_14390at 83.474 kb on + strand, within CSW01_14390at 83.502 kb on - strand, within CSW01_14390at 83.509 kb on + strand, within CSW01_14390at 83.509 kb on + strand, within CSW01_14390at 83.517 kb on - strand, within CSW01_14390at 83.662 kb on + strand, within CSW01_14390at 83.790 kb on + strand, within CSW01_14390at 83.827 kb on + strand, within CSW01_14390at 83.875 kb on + strand, within CSW01_14390at 83.875 kb on + strand, within CSW01_14390at 83.883 kb on - strand, within CSW01_14390at 83.917 kb on + strand, within CSW01_14390at 83.955 kb on + strand, within CSW01_14390at 83.955 kb on + strand, within CSW01_14390at 83.955 kb on + strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 84.029 kb on + strandat 84.178 kb on + strand, within CSW01_14395at 84.178 kb on + strand, within CSW01_14395at 84.178 kb on + strand, within CSW01_14395at 84.320 kb on + strand, within CSW01_14395at 84.363 kb on + strand, within CSW01_14395at 84.363 kb on + strand, within CSW01_14395at 84.395 kb on + strand, within CSW01_14395at 84.432 kb on + strand, within CSW01_14395at 84.440 kb on - strand, within CSW01_14395at 84.515 kb on + strandat 84.515 kb on + strandat 84.538 kb on - strandat 84.572 kb on - strand, within CSW01_14400at 84.580 kb on - strand, within CSW01_14400at 84.580 kb on - strand, within CSW01_14400at 84.582 kb on - strand, within CSW01_14400at 84.582 kb on - strand, within CSW01_14400at 84.844 kb on + strandat 84.852 kb on - strandat 84.951 kb on + strandat 84.956 kb on + strandat 84.956 kb on + strandat 84.956 kb on + strandat 84.991 kb on + strand, within CSW01_14405

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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81,991 + CSW01_14380 0.80 +0.5
82,001 + CSW01_14380 0.81 +1.3
82,003 + CSW01_14380 0.82 -0.8
82,009 - CSW01_14380 0.82 +0.1
82,038 - CSW01_14380 0.86 +0.2
82,038 - CSW01_14380 0.86 +0.1
82,091 - +0.9
82,124 + +0.9
82,227 + -0.8
82,227 + +0.3
82,235 - -0.1
82,287 - CSW01_14385 0.16 -0.8
82,291 + CSW01_14385 0.16 -0.8
82,299 - CSW01_14385 0.17 +0.9
82,312 - CSW01_14385 0.19 -0.2
82,359 + CSW01_14385 0.25 -2.0
82,359 + CSW01_14385 0.25 +0.0
82,359 + CSW01_14385 0.25 +0.2
82,389 + CSW01_14385 0.29 +0.1
82,416 - CSW01_14385 0.32 +0.1
82,435 - CSW01_14385 0.35 +0.4
82,570 + CSW01_14385 0.52 -0.4
82,572 + CSW01_14385 0.52 +0.4
82,577 + CSW01_14385 0.53 +2.5
82,577 + CSW01_14385 0.53 +0.6
82,577 + CSW01_14385 0.53 -0.5
82,577 + CSW01_14385 0.53 -0.8
82,580 - CSW01_14385 0.53 -1.0
82,582 + CSW01_14385 0.53 -0.0
82,668 + CSW01_14385 0.64 +0.1
82,742 + CSW01_14385 0.74 -0.8
82,781 - CSW01_14385 0.79 +0.6
82,781 - CSW01_14385 0.79 -0.3
82,781 - CSW01_14385 0.79 -2.9
82,799 + CSW01_14385 0.81 +0.1
82,856 + CSW01_14385 0.89 +0.7
82,914 - +0.4
82,965 + +0.2
82,989 - +0.6
83,083 + -0.2
83,083 + +2.3
83,088 + +2.9
83,088 + +0.7
83,091 - -0.0
83,183 + CSW01_14390 0.17 -0.1
83,205 - CSW01_14390 0.19 +0.5
83,207 + CSW01_14390 0.20 +1.1
83,207 + CSW01_14390 0.20 -0.3
83,215 - CSW01_14390 0.20 -0.5
83,215 - CSW01_14390 0.20 -0.8
83,294 - CSW01_14390 0.28 +0.5
83,422 - CSW01_14390 0.39 +0.3
83,442 + CSW01_14390 0.41 +0.6
83,457 - CSW01_14390 0.42 +0.1
83,459 + CSW01_14390 0.43 -0.5
83,459 + CSW01_14390 0.43 +0.2
83,459 + CSW01_14390 0.43 +0.9
83,459 + CSW01_14390 0.43 +0.4
83,466 + CSW01_14390 0.43 -0.5
83,467 - CSW01_14390 0.43 +0.1
83,467 - CSW01_14390 0.43 -0.8
83,467 - CSW01_14390 0.43 -0.1
83,474 + CSW01_14390 0.44 -0.9
83,502 - CSW01_14390 0.46 +0.9
83,509 + CSW01_14390 0.47 -0.5
83,509 + CSW01_14390 0.47 -1.9
83,517 - CSW01_14390 0.48 -0.2
83,662 + CSW01_14390 0.61 +1.0
83,790 + CSW01_14390 0.73 +0.2
83,827 + CSW01_14390 0.76 +0.1
83,875 + CSW01_14390 0.80 +0.3
83,875 + CSW01_14390 0.80 -0.7
83,883 - CSW01_14390 0.81 +0.9
83,917 + CSW01_14390 0.84 +0.7
83,955 + CSW01_14390 0.88 +0.1
83,955 + CSW01_14390 0.88 -0.8
83,955 + CSW01_14390 0.88 +0.2
83,963 - CSW01_14390 0.88 -0.4
83,963 - CSW01_14390 0.88 -0.9
83,963 - CSW01_14390 0.88 +0.5
83,963 - CSW01_14390 0.88 -0.3
83,963 - CSW01_14390 0.88 -0.6
84,029 + -0.4
84,178 + CSW01_14395 0.19 -0.0
84,178 + CSW01_14395 0.19 -0.2
84,178 + CSW01_14395 0.19 -0.2
84,320 + CSW01_14395 0.50 +0.6
84,363 + CSW01_14395 0.59 +0.8
84,363 + CSW01_14395 0.59 +1.2
84,395 + CSW01_14395 0.66 +0.3
84,432 + CSW01_14395 0.74 -0.1
84,440 - CSW01_14395 0.75 +0.1
84,515 + +0.1
84,515 + -2.0
84,538 - -0.4
84,572 - CSW01_14400 0.41 +0.1
84,580 - CSW01_14400 0.46 +0.5
84,580 - CSW01_14400 0.46 +0.2
84,582 - CSW01_14400 0.47 +0.3
84,582 - CSW01_14400 0.47 +0.1
84,844 + -0.4
84,852 - -0.5
84,951 + +0.1
84,956 + +1.5
84,956 + +0.3
84,956 + +0.2
84,991 + CSW01_14405 0.11 +0.9

Or see this region's nucleotide sequence