Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13630

Experiment: LB_Aerobic_18HR_ZN18A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Aerobic_18HR_ZN18A
2,898,704	+		CSW01_13625	0.57	+0.0
2,898,762	-		CSW01_13625	0.61	+1.4
2,898,787	-		CSW01_13625	0.63	+1.0
2,898,787	-		CSW01_13625	0.63	-0.5
2,898,787	-		CSW01_13625	0.63	-0.0
2,898,798	+		CSW01_13625	0.64	+1.8
2,898,798	+		CSW01_13625	0.64	-0.7
2,898,806	-		CSW01_13625	0.65	+0.1
2,898,806	-		CSW01_13625	0.65	-0.4
2,898,806	-		CSW01_13625	0.65	-0.9
2,898,858	-		CSW01_13625	0.69	-0.7
2,898,867	+		CSW01_13625	0.69	-0.8
2,898,873	+		CSW01_13625	0.70	-0.5
2,898,875	-		CSW01_13625	0.70	-1.5
2,898,881	-		CSW01_13625	0.70	+0.4
2,898,881	-		CSW01_13625	0.70	-1.3
2,898,884	+		CSW01_13625	0.71	+0.1
2,898,927	+		CSW01_13625	0.74	-2.0
2,898,927	+		CSW01_13625	0.74	-0.8
2,898,965	+		CSW01_13625	0.77	-0.2
2,898,970	+		CSW01_13625	0.77	-0.2
2,898,983	+		CSW01_13625	0.78	+0.5
2,898,993	+		CSW01_13625	0.79	-0.4
2,898,996	-		CSW01_13625	0.79	-0.0
2,899,001	-		CSW01_13625	0.80	+2.4
2,899,016	+		CSW01_13625	0.81	-0.1
2,899,016	+		CSW01_13625	0.81	-1.4
2,899,049	+		CSW01_13625	0.83	-0.1
2,899,057	-		CSW01_13625	0.84	+1.4
2,899,057	-		CSW01_13625	0.84	-0.0
2,899,185	-				-0.6
2,899,226	-				-0.1
2,899,231	+				-0.2
2,899,322	+				-0.2
2,899,330	-				+0.3
2,899,330	-				+0.2
2,899,409	+				+0.1
2,899,409	-				-1.1
2,899,427	-				+0.4
2,899,441	+				+0.1
2,899,441	+				-1.6
2,899,441	+				-0.2
2,899,441	+				+0.3
2,899,441	+				+1.5
2,899,441	+				-1.7
2,899,447	-				-0.3
2,899,448	+				+0.6
2,899,448	+				-0.4
2,899,449	-				+1.1
2,899,449	-				+0.6
2,899,449	-				-0.9
2,899,449	-				+1.1
2,899,449	-				-0.2
2,899,449	-				+0.6
2,899,449	-				+0.7
2,899,453	+				+0.4
2,899,453	+				+0.1
2,899,453	+				-0.5
2,899,456	-				+0.4
2,899,456	-				-0.6
2,899,456	-				+0.0
2,899,456	-				+0.2
2,899,458	+				-1.1
2,899,458	+				-0.2
2,899,458	+				+0.1
2,899,458	+				+0.4
2,899,458	+				-1.2
2,899,458	+				+1.6
2,899,458	+				+0.9
2,899,466	-				+0.7
2,899,466	-				+0.0
2,899,466	-				-0.4
2,899,466	-				-0.0
2,899,524	-				+0.3
2,899,526	+				-0.1
2,899,526	+				-0.0
2,899,534	-				+0.4
2,899,534	-				-0.6
2,899,534	-				+0.2
2,899,534	-				+0.5
2,899,534	-				-0.0
2,899,534	-				-0.8
2,899,542	+				-0.0
2,899,587	+				+0.0
2,899,595	-				-0.1
2,899,697	+				+0.5
2,899,711	+				-0.1
2,899,721	+				+1.2
2,899,721	+				+0.8
2,899,721	+				-0.0
2,899,721	+				-0.6
2,899,724	-				+0.3
2,899,729	-				-0.6
2,899,729	-				-0.9
2,899,729	-				-0.2
2,899,729	-				+0.3
2,899,729	-				+0.3
2,899,734	-				+0.1
2,899,754	-				+0.9
2,899,754	-				+0.4
2,899,787	+				+0.1
2,899,787	+				-0.4
2,899,787	+				+0.7
2,899,787	+				-0.8
2,899,795	-				-0.3
2,899,795	-				-0.9
2,899,795	-				-0.4
2,899,828	+				+0.9
2,899,833	+				+0.2
2,899,841	-				-0.4
2,899,841	-				-0.6
2,899,841	-				+0.6
2,899,876	+				-0.2
2,899,883	+				-0.8
2,899,885	+				-1.1
2,899,911	+				-0.2
2,899,911	+				-0.0
2,899,911	+				-0.4
2,899,916	+				+0.2
2,899,943	-				+0.3
2,899,972	-				+1.1
2,899,982	+				-1.1
2,899,995	-				-1.0
2,900,000	+				+1.2
2,900,009	+				-0.9
2,900,009	+				+0.3
2,900,120	-		CSW01_13630	0.13	-1.4
2,900,122	+		CSW01_13630	0.13	+1.3
2,900,122	-		CSW01_13630	0.13	+0.3
2,900,139	+		CSW01_13630	0.13	-0.7
2,900,144	+		CSW01_13630	0.13	-0.7
2,900,144	+		CSW01_13630	0.13	-0.1
2,900,144	+		CSW01_13630	0.13	+0.2
2,900,147	-		CSW01_13630	0.14	-1.9
2,900,149	+		CSW01_13630	0.14	-0.3
2,900,152	-		CSW01_13630	0.14	-0.3
2,900,175	+		CSW01_13630	0.14	+0.3
2,900,223	+		CSW01_13630	0.16	+0.6
2,900,231	+		CSW01_13630	0.16	-1.0
2,900,233	-		CSW01_13630	0.16	+1.2
2,900,285	-		CSW01_13630	0.17	+0.3
2,900,313	+		CSW01_13630	0.18	-0.1
2,900,314	+		CSW01_13630	0.18	-0.6
2,900,321	-		CSW01_13630	0.18	+0.3
2,900,456	-		CSW01_13630	0.22	+0.0
2,900,540	+		CSW01_13630	0.24	-0.5
2,900,570	-		CSW01_13630	0.25	+0.6
2,900,610	+		CSW01_13630	0.26	+0.5
2,900,610	+		CSW01_13630	0.26	-0.1
2,900,618	-		CSW01_13630	0.27	+0.5
2,900,626	+		CSW01_13630	0.27	-0.1
2,900,626	+		CSW01_13630	0.27	-0.5
2,900,634	-		CSW01_13630	0.27	-0.2
2,900,661	+		CSW01_13630	0.28	+0.2
2,900,669	-		CSW01_13630	0.28	-0.0
2,900,692	+		CSW01_13630	0.29	+0.7
2,900,736	-		CSW01_13630	0.30	-0.7
2,900,819	-		CSW01_13630	0.32	-0.1
2,900,837	-		CSW01_13630	0.33	-0.8
2,900,860	-		CSW01_13630	0.33	-0.1
2,900,925	+		CSW01_13630	0.35	+0.1
2,900,940	-		CSW01_13630	0.36	-0.7
2,900,961	+		CSW01_13630	0.36	-0.0
2,900,961	+		CSW01_13630	0.36	+0.2
2,900,969	-		CSW01_13630	0.36	+0.2
2,900,999	-		CSW01_13630	0.37	-1.1
2,900,999	-		CSW01_13630	0.37	+0.4
2,901,038	+		CSW01_13630	0.38	-0.6
2,901,076	+		CSW01_13630	0.39	+0.2
2,901,076	+		CSW01_13630	0.39	+1.2
2,901,079	-		CSW01_13630	0.39	+0.4
2,901,116	-		CSW01_13630	0.40	+0.3
2,901,118	-		CSW01_13630	0.41	-0.2
2,901,118	-		CSW01_13630	0.41	+0.2
2,901,131	+		CSW01_13630	0.41	-0.1
2,901,139	-		CSW01_13630	0.41	-0.1
2,901,139	-		CSW01_13630	0.41	+0.6
2,901,139	-		CSW01_13630	0.41	-0.1
2,901,139	-		CSW01_13630	0.41	+1.0
2,901,147	-		CSW01_13630	0.41	+0.4
2,901,155	+		CSW01_13630	0.42	+0.2
2,901,167	+		CSW01_13630	0.42	+0.2
2,901,221	+		CSW01_13630	0.43	-0.6
2,901,221	+		CSW01_13630	0.43	-0.4
2,901,229	-		CSW01_13630	0.44	-0.2
2,901,236	-		CSW01_13630	0.44	+0.0
2,901,364	+		CSW01_13630	0.47	-0.3
2,901,372	+		CSW01_13630	0.48	-1.7
2,901,420	+		CSW01_13630	0.49	+1.0
2,901,428	-		CSW01_13630	0.49	-0.2
2,901,428	-		CSW01_13630	0.49	+0.8
2,901,428	-		CSW01_13630	0.49	+0.4
2,901,428	-		CSW01_13630	0.49	+0.6
2,901,524	+		CSW01_13630	0.52	-0.0
2,901,532	-		CSW01_13630	0.52	-0.6
2,901,532	-		CSW01_13630	0.52	-0.3
2,901,569	-		CSW01_13630	0.53	+0.6
2,901,569	-		CSW01_13630	0.53	+0.6
2,901,573	+		CSW01_13630	0.53	+0.3
2,901,573	+		CSW01_13630	0.53	+1.1
2,901,573	+		CSW01_13630	0.53	-0.6
2,901,573	+		CSW01_13630	0.53	+0.1
2,901,575	+		CSW01_13630	0.53	+0.3
2,901,581	-		CSW01_13630	0.53	+0.0
2,901,581	-		CSW01_13630	0.53	-1.0
2,901,581	-		CSW01_13630	0.53	-0.2
2,901,581	-		CSW01_13630	0.53	+0.7
2,901,581	-		CSW01_13630	0.53	-0.1
2,901,581	-		CSW01_13630	0.53	-0.7
2,901,581	-		CSW01_13630	0.53	-0.4
2,901,581	-		CSW01_13630	0.53	-0.1
2,901,696	-		CSW01_13630	0.57	-2.6
2,901,701	+		CSW01_13630	0.57	+0.8
2,901,701	+		CSW01_13630	0.57	-1.1
2,901,709	-		CSW01_13630	0.57	+0.9
2,901,709	-		CSW01_13630	0.57	-0.6
2,901,709	-		CSW01_13630	0.57	-1.1
2,901,721	-		CSW01_13630	0.57	-0.2
2,901,745	+		CSW01_13630	0.58	+3.1
2,901,745	+		CSW01_13630	0.58	+0.0
2,901,753	-		CSW01_13630	0.58	+0.2
2,901,753	-		CSW01_13630	0.58	+0.2
2,901,825	+		CSW01_13630	0.60	-1.0
2,901,825	+		CSW01_13630	0.60	+0.1
2,901,839	-		CSW01_13630	0.61	+0.7
2,902,006	+		CSW01_13630	0.65	+0.3
2,902,014	-		CSW01_13630	0.65	-0.5
2,902,014	-		CSW01_13630	0.65	-0.1
2,902,016	+		CSW01_13630	0.65	+0.2
2,902,031	+		CSW01_13630	0.66	-0.6
2,902,050	+		CSW01_13630	0.66	+0.4
2,902,055	+		CSW01_13630	0.67	+1.0
2,902,064	+		CSW01_13630	0.67	+0.2
2,902,064	+		CSW01_13630	0.67	+0.0
2,902,089	-		CSW01_13630	0.67	-1.2
2,902,089	-		CSW01_13630	0.67	+0.2
2,902,131	+		CSW01_13630	0.69	+0.3
2,902,131	+		CSW01_13630	0.69	-0.7
2,902,131	+		CSW01_13630	0.69	+0.1
2,902,151	+		CSW01_13630	0.69	-1.8
2,902,229	+		CSW01_13630	0.71	+0.2
2,902,237	-		CSW01_13630	0.72	+1.2
2,902,246	+		CSW01_13630	0.72	+0.1
2,902,284	+		CSW01_13630	0.73	+0.1
2,902,284	+		CSW01_13630	0.73	-0.3
2,902,284	+		CSW01_13630	0.73	-1.0
2,902,292	-		CSW01_13630	0.73	-0.6
2,902,292	-		CSW01_13630	0.73	+0.9
2,902,292	-		CSW01_13630	0.73	+1.7
2,902,297	-		CSW01_13630	0.73	+0.0
2,902,311	-		CSW01_13630	0.74	+0.3
2,902,328	+		CSW01_13630	0.74	+0.0
2,902,350	+		CSW01_13630	0.75	-1.4
2,902,350	+		CSW01_13630	0.75	-0.2
2,902,351	-		CSW01_13630	0.75	+1.0
2,902,358	-		CSW01_13630	0.75	+0.1
2,902,358	-		CSW01_13630	0.75	+0.6
2,902,358	-		CSW01_13630	0.75	-0.1
2,902,358	-		CSW01_13630	0.75	-0.1
2,902,373	-		CSW01_13630	0.75	-2.0
2,902,383	-		CSW01_13630	0.76	+0.8
2,902,402	+		CSW01_13630	0.76	+0.5
2,902,441	+		CSW01_13630	0.77	+2.6
2,902,466	+		CSW01_13630	0.78	+0.1
2,902,481	-		CSW01_13630	0.78	+1.7
2,902,572	+		CSW01_13630	0.81	+0.3
2,902,633	-		CSW01_13630	0.83	+0.8
2,902,693	-		CSW01_13630	0.84	-0.8
2,902,767	+		CSW01_13630	0.86	+0.1
2,902,775	-		CSW01_13630	0.87	+0.3
2,902,923	+				-0.3
2,902,930	-				-1.0
2,902,940	+				+0.9
2,902,966	-				-0.2
2,902,972	-				+1.2
2,902,998	-				+2.7
2,903,024	+				+1.3
2,903,032	-				+0.3
2,903,036	+				-0.2
2,903,044	-				-0.1
2,903,044	-				+1.7
2,903,044	-				-2.2
2,903,055	+				+0.2
2,903,080	+				+0.8
2,903,080	+				-1.2
2,903,080	+				-0.4
2,903,080	+				-0.7
2,903,088	-				+0.0
2,903,088	-				+0.1
2,903,088	-				+0.8
2,903,088	-				+0.1
2,903,088	-				-0.3
2,903,088	-				-1.4
2,903,088	-				+0.6
2,903,147	+				-0.5
2,903,156	-				+0.0
2,903,202	-				-0.0
2,903,278	-				-0.7
2,903,296	+				+1.3
2,903,320	+				+0.1
2,903,334	-				-0.2
2,903,361	+				-0.4
2,903,363	+				-0.3
2,903,369	-				-1.0
2,903,371	-				-0.1
2,903,376	-				+0.3
2,903,376	-				-1.0
2,903,377	+				+0.3
2,903,507	-				+0.3
2,903,509	-				+1.4
2,903,537	+				+2.0
2,903,550	-				+1.3
2,903,557	+				+1.6
2,903,633	-		CSW01_13635	0.12	-1.4
2,903,634	-		CSW01_13635	0.12	-0.8
2,903,822	+		CSW01_13635	0.22	+0.5
2,903,876	+		CSW01_13635	0.25	+0.5
2,903,907	+		CSW01_13635	0.27	+1.8
2,903,928	-		CSW01_13635	0.28	+0.4
2,903,939	+		CSW01_13635	0.29	+0.7
2,903,947	-		CSW01_13635	0.29	+0.3
2,904,012	+		CSW01_13635	0.33	-0.2
2,904,047	-		CSW01_13635	0.35	+0.6
2,904,052	-		CSW01_13635	0.35	+1.0
2,904,096	-		CSW01_13635	0.38	+2.0
2,904,137	-		CSW01_13635	0.40	+1.0
2,904,167	+		CSW01_13635	0.42	-0.6
2,904,167	+		CSW01_13635	0.42	+0.6
2,904,167	+		CSW01_13635	0.42	+0.6
2,904,167	+		CSW01_13635	0.42	+0.5
2,904,169	+		CSW01_13635	0.42	-0.0
2,904,169	+		CSW01_13635	0.42	+1.6
2,904,175	-		CSW01_13635	0.42	+0.6
2,904,175	-		CSW01_13635	0.42	+1.1
2,904,175	-		CSW01_13635	0.42	+0.6
2,904,175	-		CSW01_13635	0.42	-0.2
2,904,225	+		CSW01_13635	0.45	+2.3
2,904,241	-		CSW01_13635	0.46	-0.9