Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13425

Experiment: LB_Aerobic_18HR_ZN18A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Aerobic_18HR_ZN18A
2,857,275	+		CSW01_13420	0.39	-2.6
2,857,340	-		CSW01_13420	0.46	+0.2
2,857,365	-		CSW01_13420	0.49	-0.8
2,857,384	-		CSW01_13420	0.51	-1.4
2,857,646	-		CSW01_13420	0.78	-1.4
2,857,714	-		CSW01_13420	0.85	+0.3
2,857,736	+		CSW01_13420	0.87	-1.4
2,857,859	+				-1.5
2,857,868	-				-0.4
2,857,895	+				+0.8
2,857,950	-				-0.6
2,858,025	+				+0.2
2,858,025	+				+0.5
2,858,025	+				-0.4
2,858,025	+				-0.1
2,858,025	+				-0.7
2,858,025	+				+0.8
2,858,025	+				-0.3
2,858,025	+				-0.5
2,858,025	+				+0.1
2,858,030	+				+0.0
2,858,030	+				+0.2
2,858,030	+				-0.2
2,858,033	-				-0.2
2,858,033	-				-0.8
2,858,033	-				-0.4
2,858,033	-				-1.1
2,858,037	+				+0.3
2,858,038	-				-0.3
2,858,060	+				+0.5
2,858,061	+				+0.6
2,858,068	-				-0.4
2,858,076	+				-0.4
2,858,083	-				-1.0
2,858,097	+				-0.7
2,858,105	-				-0.4
2,858,127	+				+0.7
2,858,163	+				+1.3
2,858,216	+				+1.0
2,858,250	+				+0.1
2,858,309	-				-0.5
2,858,317	+				-1.3
2,858,322	+				-1.7
2,858,325	-				+0.3
2,858,347	+				+0.1
2,858,347	+				-0.2
2,858,355	-		CSW01_13425	0.10	-1.1
2,858,445	-		CSW01_13425	0.15	+0.1
2,858,464	+		CSW01_13425	0.16	-0.8
2,858,479	+		CSW01_13425	0.17	-1.8
2,858,537	-		CSW01_13425	0.20	-0.4
2,858,581	+		CSW01_13425	0.23	-0.4
2,858,640	-		CSW01_13425	0.26	-1.4
2,858,740	+		CSW01_13425	0.31	+0.3
2,858,748	-		CSW01_13425	0.32	-0.3
2,858,773	-		CSW01_13425	0.33	-0.8
2,858,775	+		CSW01_13425	0.33	-0.7
2,858,822	-		CSW01_13425	0.36	-3.1
2,858,834	+		CSW01_13425	0.37	-1.1
2,858,839	+		CSW01_13425	0.37	-0.4
2,858,842	-		CSW01_13425	0.37	-0.1
2,858,842	-		CSW01_13425	0.37	-0.9
2,858,842	-		CSW01_13425	0.37	-0.6
2,858,873	-		CSW01_13425	0.39	-2.2
2,858,883	+		CSW01_13425	0.39	+0.1
2,858,896	+		CSW01_13425	0.40	-0.4
2,858,930	+		CSW01_13425	0.42	+0.6
2,859,005	-		CSW01_13425	0.46	-0.2
2,859,099	+		CSW01_13425	0.51	-0.2
2,859,107	-		CSW01_13425	0.52	-0.0
2,859,113	+		CSW01_13425	0.52	-0.9
2,859,113	+		CSW01_13425	0.52	-0.5
2,859,113	+		CSW01_13425	0.52	-0.3
2,859,113	+		CSW01_13425	0.52	+0.2
2,859,113	+		CSW01_13425	0.52	-0.6
2,859,113	+		CSW01_13425	0.52	-0.6
2,859,113	+		CSW01_13425	0.52	+0.3
2,859,113	+		CSW01_13425	0.52	+0.4
2,859,113	+		CSW01_13425	0.52	-1.5
2,859,113	+		CSW01_13425	0.52	-0.6
2,859,113	+		CSW01_13425	0.52	-1.4
2,859,113	+		CSW01_13425	0.52	-0.7
2,859,113	+		CSW01_13425	0.52	-0.0
2,859,113	+		CSW01_13425	0.52	-0.6
2,859,113	+		CSW01_13425	0.52	+0.4
2,859,113	+		CSW01_13425	0.52	-0.6
2,859,113	+		CSW01_13425	0.52	-2.2
2,859,113	+		CSW01_13425	0.52	-1.0
2,859,113	+		CSW01_13425	0.52	-0.4
2,859,113	+		CSW01_13425	0.52	-0.9
2,859,113	+		CSW01_13425	0.52	-0.1
2,859,113	+		CSW01_13425	0.52	+0.2
2,859,113	+		CSW01_13425	0.52	+0.6
2,859,113	+		CSW01_13425	0.52	-1.7
2,859,113	+		CSW01_13425	0.52	-1.1
2,859,113	+		CSW01_13425	0.52	-1.1
2,859,113	+		CSW01_13425	0.52	-1.4
2,859,113	+		CSW01_13425	0.52	-0.8
2,859,113	+		CSW01_13425	0.52	-2.0
2,859,113	+		CSW01_13425	0.52	+0.8
2,859,113	+		CSW01_13425	0.52	-2.8
2,859,114	+		CSW01_13425	0.52	-0.1
2,859,114	+		CSW01_13425	0.52	-1.9
2,859,114	+		CSW01_13425	0.52	-1.4
2,859,121	-		CSW01_13425	0.52	-0.4
2,859,121	-		CSW01_13425	0.52	-1.4
2,859,121	-		CSW01_13425	0.52	-0.8
2,859,121	-		CSW01_13425	0.52	+0.4
2,859,121	-		CSW01_13425	0.52	-0.6
2,859,121	-		CSW01_13425	0.52	+0.2
2,859,121	-		CSW01_13425	0.52	-1.4
2,859,121	-		CSW01_13425	0.52	-2.4
2,859,121	-		CSW01_13425	0.52	-0.3
2,859,121	-		CSW01_13425	0.52	-1.4
2,859,121	-		CSW01_13425	0.52	-0.7
2,859,121	-		CSW01_13425	0.52	-0.4
2,859,121	-		CSW01_13425	0.52	-1.1
2,859,121	-		CSW01_13425	0.52	-1.2
2,859,121	-		CSW01_13425	0.52	+0.7
2,859,121	-		CSW01_13425	0.52	+0.4
2,859,121	-		CSW01_13425	0.52	-0.0
2,859,121	-		CSW01_13425	0.52	-0.4
2,859,121	-		CSW01_13425	0.52	-0.5
2,859,121	-		CSW01_13425	0.52	-2.8
2,859,141	-		CSW01_13425	0.54	-0.6
2,859,160	+		CSW01_13425	0.55	-1.2
2,859,177	+		CSW01_13425	0.56	+0.8
2,859,190	-		CSW01_13425	0.56	-1.4
2,859,227	+		CSW01_13425	0.58	-0.6
2,859,232	+		CSW01_13425	0.59	-1.5
2,859,251	-		CSW01_13425	0.60	-1.6
2,859,325	+		CSW01_13425	0.64	-1.1
2,859,330	+		CSW01_13425	0.64	-0.2
2,859,330	+		CSW01_13425	0.64	-0.5
2,859,338	-		CSW01_13425	0.64	-1.5
2,859,350	-		CSW01_13425	0.65	-2.0
2,859,414	-		CSW01_13425	0.69	-0.4
2,859,421	+		CSW01_13425	0.69	-0.7
2,859,423	+		CSW01_13425	0.69	-1.8
2,859,431	-		CSW01_13425	0.70	-0.1
2,859,467	-		CSW01_13425	0.72	+0.2
2,859,467	-		CSW01_13425	0.72	+1.1
2,859,469	+		CSW01_13425	0.72	+0.2
2,859,516	-		CSW01_13425	0.74	-2.0
2,859,525	+		CSW01_13425	0.75	-0.8
2,859,525	+		CSW01_13425	0.75	-1.4
2,859,541	+		CSW01_13425	0.76	+0.2
2,859,554	-		CSW01_13425	0.76	+1.0
2,859,666	+		CSW01_13425	0.83	+1.6
2,859,666	+		CSW01_13425	0.83	+0.2
2,859,666	+		CSW01_13425	0.83	-1.0
2,859,671	+		CSW01_13425	0.83	-1.2
2,859,672	-		CSW01_13425	0.83	-0.9
2,859,674	-		CSW01_13425	0.83	-0.2
2,859,679	-		CSW01_13425	0.83	-0.1
2,859,681	+		CSW01_13425	0.83	-0.2
2,859,707	+		CSW01_13425	0.85	-0.4
2,859,707	+		CSW01_13425	0.85	+0.1
2,859,707	+		CSW01_13425	0.85	-1.4
2,859,707	+		CSW01_13425	0.85	-0.7
2,859,707	+		CSW01_13425	0.85	-1.4
2,859,714	-		CSW01_13425	0.85	-0.2
2,859,715	-		CSW01_13425	0.85	-0.6
2,859,715	-		CSW01_13425	0.85	+0.1
2,859,729	+		CSW01_13425	0.86	+0.7
2,859,737	+		CSW01_13425	0.86	+0.2
2,859,737	+		CSW01_13425	0.86	-1.2
2,859,737	+		CSW01_13425	0.86	-0.0
2,859,737	+		CSW01_13425	0.86	-3.8
2,859,737	+		CSW01_13425	0.86	-0.2
2,859,742	+		CSW01_13425	0.87	-0.2
2,859,745	-		CSW01_13425	0.87	-0.9
2,859,745	-		CSW01_13425	0.87	-0.8
2,859,745	-		CSW01_13425	0.87	-0.4
2,859,747	+		CSW01_13425	0.87	-0.4
2,859,764	+		CSW01_13425	0.88	-3.0
2,859,764	+		CSW01_13425	0.88	-0.6
2,859,764	+		CSW01_13425	0.88	-0.8
2,859,764	+		CSW01_13425	0.88	+0.9
2,859,769	+		CSW01_13425	0.88	-0.7
2,859,777	-		CSW01_13425	0.89	-0.6
2,859,786	+		CSW01_13425	0.89	-1.2
2,859,786	+		CSW01_13425	0.89	-0.2
2,859,786	+		CSW01_13425	0.89	+1.9
2,859,794	-		CSW01_13425	0.90	-2.0
2,859,794	-		CSW01_13425	0.90	-2.8
2,859,794	-		CSW01_13425	0.90	-0.4
2,859,794	-		CSW01_13425	0.90	-1.0
2,859,794	-		CSW01_13425	0.90	-1.6
2,859,796	-		CSW01_13425	0.90	+0.8
2,859,856	-				-0.8
2,859,907	+				-2.1
2,859,917	-				-1.2
2,859,943	+				+0.9
2,859,962	+				-0.4
2,859,962	+				-0.8
2,860,041	+				-0.9
2,860,187	+		CSW01_13430	0.27	-1.4
2,860,195	-		CSW01_13430	0.28	+0.1
2,860,195	-		CSW01_13430	0.28	-0.0
2,860,229	+		CSW01_13430	0.33	-0.7
2,860,250	+		CSW01_13430	0.35	+0.9
2,860,250	+		CSW01_13430	0.35	-1.1
2,860,293	-		CSW01_13430	0.41	-2.4
2,860,362	+		CSW01_13430	0.50	-1.4
2,860,370	-		CSW01_13430	0.51	-0.8
2,860,372	+		CSW01_13430	0.52	-1.7
2,860,372	+		CSW01_13430	0.52	-1.4
2,860,372	+		CSW01_13430	0.52	-0.9
2,860,377	+		CSW01_13430	0.52	-2.2
2,860,380	-		CSW01_13430	0.53	+0.1
2,860,385	-		CSW01_13430	0.53	-0.7
2,860,387	+		CSW01_13430	0.53	+0.2
2,860,395	-		CSW01_13430	0.55	+1.7
2,860,395	-		CSW01_13430	0.55	-0.8
2,860,413	-		CSW01_13430	0.57	-0.4
2,860,445	-		CSW01_13430	0.61	-2.2
2,860,450	-		CSW01_13430	0.62	-1.2
2,860,467	+		CSW01_13430	0.64	-0.6
2,860,474	+		CSW01_13430	0.65	-0.3
2,860,504	+		CSW01_13430	0.69	-1.1
2,860,526	+		CSW01_13430	0.72	-2.0
2,860,541	+		CSW01_13430	0.74	+0.0
2,860,541	+		CSW01_13430	0.74	-1.7
2,860,549	-		CSW01_13430	0.75	-0.2
2,860,565	+		CSW01_13430	0.77	-0.5
2,860,589	+		CSW01_13430	0.80	-0.9
2,860,589	+		CSW01_13430	0.80	-1.0
2,860,589	+		CSW01_13430	0.80	+0.2
2,860,597	-		CSW01_13430	0.81	-0.4
2,860,597	-		CSW01_13430	0.81	-1.0
2,860,597	-		CSW01_13430	0.81	-0.6
2,860,605	-		CSW01_13430	0.82	-0.7
2,860,612	+		CSW01_13430	0.83	-1.0
2,860,612	+		CSW01_13430	0.83	-1.0
2,860,612	+		CSW01_13430	0.83	-0.5
2,860,612	+		CSW01_13430	0.83	-0.8
2,860,612	+		CSW01_13430	0.83	+0.7
2,860,612	+		CSW01_13430	0.83	-0.3
2,860,612	+		CSW01_13430	0.83	-1.3
2,860,612	+		CSW01_13430	0.83	-0.8
2,860,612	+		CSW01_13430	0.83	-0.4
2,860,612	+		CSW01_13430	0.83	-1.6
2,860,612	+		CSW01_13430	0.83	-0.1
2,860,612	+		CSW01_13430	0.83	-0.3
2,860,612	+		CSW01_13430	0.83	-1.3
2,860,612	+		CSW01_13430	0.83	-1.0
2,860,612	+		CSW01_13430	0.83	-2.1
2,860,612	+		CSW01_13430	0.83	-0.8
2,860,620	-		CSW01_13430	0.84	-1.0
2,860,620	-		CSW01_13430	0.84	-1.6
2,860,620	-		CSW01_13430	0.84	+0.0
2,860,620	-		CSW01_13430	0.84	-1.0
2,860,620	-		CSW01_13430	0.84	-0.8
2,860,620	-		CSW01_13430	0.84	-0.2
2,860,620	-		CSW01_13430	0.84	-1.4
2,860,620	-		CSW01_13430	0.84	-0.4
2,860,620	-		CSW01_13430	0.84	+1.0
2,860,673	+				+0.6
2,860,677	+				-2.2
2,860,700	+				-0.4
2,860,708	-				-2.9
2,860,757	+				+0.0
2,860,758	-				-0.6
2,860,765	-				+1.2
2,860,765	-				-1.0
2,860,765	-				-1.0
2,860,820	-		CSW01_13435	0.20	-1.2
2,860,851	+		CSW01_13435	0.28	-0.1
2,860,859	-		CSW01_13435	0.30	-1.4
2,860,859	-		CSW01_13435	0.30	+0.4
2,860,864	-		CSW01_13435	0.32	-0.2
2,860,869	-		CSW01_13435	0.33	-0.5
2,860,869	-		CSW01_13435	0.33	-0.5
2,860,869	-		CSW01_13435	0.33	-0.6
2,860,874	+		CSW01_13435	0.34	+0.6
2,860,874	+		CSW01_13435	0.34	-1.1
2,860,882	-		CSW01_13435	0.36	-1.9
2,860,896	-		CSW01_13435	0.40	+0.4
2,860,897	+		CSW01_13435	0.40	-2.0
2,860,904	-		CSW01_13435	0.42	+0.8
2,860,904	-		CSW01_13435	0.42	-0.8
2,860,904	-		CSW01_13435	0.42	-0.3
2,860,904	-		CSW01_13435	0.42	+0.1
2,860,970	+		CSW01_13435	0.59	-0.0
2,860,977	-		CSW01_13435	0.61	-0.7