Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09205

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09200 and CSW01_09205 are separated by 17 nucleotidesCSW01_09205 and CSW01_09210 are separated by 2 nucleotidesCSW01_09210 and CSW01_09215 overlap by 11 nucleotides CSW01_09200: CSW01_09200 - protein TolA, at 1,977,249 to 1,978,319 _09200 CSW01_09205: CSW01_09205 - protein TolR, at 1,978,337 to 1,978,777 _09205 CSW01_09210: CSW01_09210 - protein TolQ, at 1,978,780 to 1,979,463 _09210 CSW01_09215: CSW01_09215 - tol-pal system-associated acyl-CoA thioesterase, at 1,979,453 to 1,979,920 _09215 Position (kb) 1978 1979Strain fitness (log2 ratio) -2 -1 0 1at 1979.309 kb on - strand, within CSW01_09210at 1979.535 kb on + strand, within CSW01_09215at 1979.535 kb on + strand, within CSW01_09215at 1979.723 kb on - strand, within CSW01_09215

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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1,979,309 - CSW01_09210 0.77 -0.8
1,979,535 + CSW01_09215 0.18 +0.4
1,979,535 + CSW01_09215 0.18 -2.1
1,979,723 - CSW01_09215 0.58 +0.2

Or see this region's nucleotide sequence