Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06745

Experiment: LB_Aerobic_18HR_ZN18A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Aerobic_18HR_ZN18A
1,419,878	+		CSW01_06740	0.28	+0.0
1,419,878	-		CSW01_06740	0.28	+0.3
1,419,893	-		CSW01_06740	0.29	-0.4
1,419,894	-		CSW01_06740	0.29	-0.2
1,419,901	+		CSW01_06740	0.30	-0.5
1,419,969	+		CSW01_06740	0.36	+0.1
1,419,997	-		CSW01_06740	0.39	-0.4
1,420,005	-		CSW01_06740	0.39	+0.3
1,420,059	+		CSW01_06740	0.44	-1.4
1,420,098	+		CSW01_06740	0.47	-0.1
1,420,109	-		CSW01_06740	0.48	-0.6
1,420,221	-		CSW01_06740	0.58	+1.7
1,420,231	-		CSW01_06740	0.59	-0.8
1,420,309	-		CSW01_06740	0.66	-0.4
1,420,335	+		CSW01_06740	0.68	+0.3
1,420,429	+		CSW01_06740	0.77	-1.6
1,420,429	+		CSW01_06740	0.77	+0.1
1,420,437	+		CSW01_06740	0.77	-0.7
1,420,439	+		CSW01_06740	0.78	+0.8
1,420,439	+		CSW01_06740	0.78	+0.6
1,420,447	-		CSW01_06740	0.78	+0.1
1,420,447	-		CSW01_06740	0.78	-0.0
1,420,468	-		CSW01_06740	0.80	-3.4
1,420,596	+				-0.0
1,420,670	-				+1.4
1,420,688	+				+1.0
1,420,693	+				+0.7
1,420,696	-				+1.4
1,420,696	-				-0.8
1,420,707	+				+0.7
1,420,728	+				-0.9
1,420,736	-				+0.6
1,420,736	-				-0.4
1,420,736	-				+0.1
1,420,823	+				+0.0
1,420,831	-				-0.8
1,420,831	-				+1.1
1,421,084	-		CSW01_06745	0.11	-0.7
1,421,121	+		CSW01_06745	0.13	+0.4
1,421,121	+		CSW01_06745	0.13	+1.1
1,421,129	-		CSW01_06745	0.13	-1.9
1,421,197	-		CSW01_06745	0.16	-0.4
1,421,218	+		CSW01_06745	0.16	-0.4
1,421,218	+		CSW01_06745	0.16	-2.4
1,421,218	+		CSW01_06745	0.16	-0.3
1,421,218	+		CSW01_06745	0.16	-0.6
1,421,218	+		CSW01_06745	0.16	-1.9
1,421,226	-		CSW01_06745	0.17	+0.1
1,421,226	-		CSW01_06745	0.17	-0.0
1,421,226	-		CSW01_06745	0.17	-0.5
1,421,226	-		CSW01_06745	0.17	+0.7
1,421,226	-		CSW01_06745	0.17	+0.8
1,421,270	-		CSW01_06745	0.18	-0.5
1,421,270	-		CSW01_06745	0.18	-1.7
1,421,270	-		CSW01_06745	0.18	+1.3
1,421,270	-		CSW01_06745	0.18	-0.2
1,421,288	+		CSW01_06745	0.19	-0.0
1,421,355	+		CSW01_06745	0.22	+0.6
1,421,400	-		CSW01_06745	0.23	-1.4
1,421,402	+		CSW01_06745	0.24	-0.0
1,421,402	+		CSW01_06745	0.24	+0.1
1,421,402	+		CSW01_06745	0.24	-0.2
1,421,410	-		CSW01_06745	0.24	-0.2
1,421,410	-		CSW01_06745	0.24	-0.7
1,421,419	+		CSW01_06745	0.24	-0.3
1,421,453	+		CSW01_06745	0.25	+0.8
1,421,476	-		CSW01_06745	0.26	+0.1
1,421,476	-		CSW01_06745	0.26	+0.8
1,421,516	+		CSW01_06745	0.28	+0.3
1,421,581	-		CSW01_06745	0.30	+0.8
1,421,605	+		CSW01_06745	0.31	+0.0
1,421,605	+		CSW01_06745	0.31	+0.8
1,421,605	+		CSW01_06745	0.31	-0.3
1,421,605	+		CSW01_06745	0.31	-0.5
1,421,605	+		CSW01_06745	0.31	-0.6
1,421,712	+		CSW01_06745	0.35	-1.1
1,421,770	-		CSW01_06745	0.38	+0.2
1,421,806	+		CSW01_06745	0.39	-1.7
1,421,807	+		CSW01_06745	0.39	+0.1
1,421,822	+		CSW01_06745	0.40	+0.5
1,421,822	+		CSW01_06745	0.40	-0.6
1,421,822	+		CSW01_06745	0.40	-0.1
1,421,822	+		CSW01_06745	0.40	-1.1
1,421,830	-		CSW01_06745	0.40	-0.1
1,421,830	-		CSW01_06745	0.40	-1.3
1,421,830	-		CSW01_06745	0.40	+1.1
1,421,830	-		CSW01_06745	0.40	+1.5
1,421,836	+		CSW01_06745	0.40	-0.9
1,421,865	+		CSW01_06745	0.41	+0.0
1,421,865	+		CSW01_06745	0.41	-0.4
1,421,865	+		CSW01_06745	0.41	+0.0
1,421,872	+		CSW01_06745	0.42	-1.9
1,421,873	-		CSW01_06745	0.42	+0.1
1,421,954	-		CSW01_06745	0.45	-1.0
1,422,022	+		CSW01_06745	0.47	+0.3
1,422,049	-		CSW01_06745	0.48	+1.0
1,422,109	-		CSW01_06745	0.51	-0.1
1,422,117	-		CSW01_06745	0.51	+0.3
1,422,117	-		CSW01_06745	0.51	-0.7
1,422,136	-		CSW01_06745	0.52	-1.1
1,422,151	-		CSW01_06745	0.52	+0.3
1,422,178	+		CSW01_06745	0.53	+0.9
1,422,178	+		CSW01_06745	0.53	+0.2
1,422,178	+		CSW01_06745	0.53	-0.2
1,422,178	+		CSW01_06745	0.53	+0.8
1,422,214	-		CSW01_06745	0.55	+0.7
1,422,228	-		CSW01_06745	0.55	+0.4
1,422,396	+		CSW01_06745	0.62	+0.7
1,422,455	-		CSW01_06745	0.64	+0.1
1,422,457	+		CSW01_06745	0.64	-1.0
1,422,505	-		CSW01_06745	0.66	-0.1
1,422,536	+		CSW01_06745	0.67	+1.0
1,422,536	+		CSW01_06745	0.67	+0.3
1,422,615	-		CSW01_06745	0.70	+0.4
1,422,664	-		CSW01_06745	0.72	-0.2
1,422,691	-		CSW01_06745	0.73	+1.9
1,422,778	+		CSW01_06745	0.76	+0.1
1,422,786	-		CSW01_06745	0.77	+0.9
1,422,786	-		CSW01_06745	0.77	+0.5
1,422,830	-		CSW01_06745	0.78	+0.1
1,422,876	-		CSW01_06745	0.80	+0.3
1,422,886	-		CSW01_06745	0.80	-0.4
1,422,927	+		CSW01_06745	0.82	-1.0
1,422,991	+		CSW01_06745	0.84	+1.3
1,423,039	+		CSW01_06745	0.86	-0.2
1,423,039	+		CSW01_06745	0.86	+0.3
1,423,047	-		CSW01_06745	0.87	-0.4
1,423,078	+		CSW01_06745	0.88	-1.8
1,423,188	+				+0.1
1,423,203	+				+0.2
1,423,208	+				-0.5
1,423,213	+				-0.1
1,423,236	+				+0.8
1,423,244	-				+0.1
1,423,244	-				+0.4
1,423,255	-				+2.0
1,423,260	-				+0.6
1,423,260	-				-0.4
1,423,380	-				+2.1
1,423,392	+				+0.4
1,423,392	+				-0.4
1,423,400	-				+0.1
1,423,400	-				-0.7
1,423,400	-				-0.0
1,423,406	+				-0.6
1,423,414	-				-0.6
1,423,530	+		CSW01_06750	0.10	-0.1
1,423,538	-		CSW01_06750	0.11	+0.1
1,423,555	+		CSW01_06750	0.13	+0.7
1,423,630	+		CSW01_06750	0.19	-0.6
1,423,638	-		CSW01_06750	0.19	+0.0
1,423,756	+		CSW01_06750	0.29	-0.4
1,423,761	+		CSW01_06750	0.30	+0.1
1,423,766	+		CSW01_06750	0.30	-0.2
1,423,774	-		CSW01_06750	0.31	-0.4
1,423,792	+		CSW01_06750	0.32	-0.3
1,423,845	-		CSW01_06750	0.37	+0.5
1,423,872	+		CSW01_06750	0.39	+1.0
1,423,872	+		CSW01_06750	0.39	+0.0
1,423,872	+		CSW01_06750	0.39	+1.2
1,423,872	+		CSW01_06750	0.39	-1.5
1,423,872	+		CSW01_06750	0.39	-0.3
1,423,880	-		CSW01_06750	0.40	-0.5
1,423,880	-		CSW01_06750	0.40	+0.2
1,423,880	-		CSW01_06750	0.40	+0.8
1,423,880	-		CSW01_06750	0.40	-0.9
1,423,880	-		CSW01_06750	0.40	+0.6
1,423,888	+		CSW01_06750	0.40	-0.9
1,423,961	-		CSW01_06750	0.46	+0.1
1,423,978	-		CSW01_06750	0.48	-0.2
1,423,978	-		CSW01_06750	0.48	+0.9
1,423,985	+		CSW01_06750	0.48	+0.4
1,424,031	+		CSW01_06750	0.52	+0.4
1,424,124	+		CSW01_06750	0.60	-0.2
1,424,132	-		CSW01_06750	0.61	+0.4
1,424,132	-		CSW01_06750	0.61	-0.7
1,424,333	+		CSW01_06750	0.77	-2.2