Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05755

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05750 and CSW01_05755 are separated by 3 nucleotidesCSW01_05755 and CSW01_05760 are separated by 51 nucleotides CSW01_05750: CSW01_05750 - histidinol dehydrogenase, at 1,200,921 to 1,202,216 _05750 CSW01_05755: CSW01_05755 - histidinol-phosphate transaminase, at 1,202,220 to 1,203,260 _05755 CSW01_05760: CSW01_05760 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase, at 1,203,312 to 1,204,385 _05760 Position (kb) 1202 1203 1204Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1201.301 kb on - strand, within CSW01_05750at 1201.388 kb on + strand, within CSW01_05750at 1201.388 kb on + strand, within CSW01_05750at 1201.396 kb on - strand, within CSW01_05750at 1201.396 kb on - strand, within CSW01_05750at 1201.426 kb on + strand, within CSW01_05750at 1201.444 kb on - strand, within CSW01_05750at 1201.460 kb on - strand, within CSW01_05750at 1201.460 kb on - strand, within CSW01_05750at 1201.490 kb on + strand, within CSW01_05750at 1201.490 kb on + strand, within CSW01_05750at 1201.498 kb on - strand, within CSW01_05750at 1201.626 kb on + strand, within CSW01_05750at 1201.634 kb on - strand, within CSW01_05750at 1201.682 kb on - strand, within CSW01_05750at 1201.700 kb on - strand, within CSW01_05750at 1201.745 kb on - strand, within CSW01_05750at 1201.775 kb on + strand, within CSW01_05750at 1201.852 kb on + strand, within CSW01_05750at 1201.882 kb on + strand, within CSW01_05750at 1201.951 kb on + strand, within CSW01_05750at 1202.063 kb on - strand, within CSW01_05750at 1202.075 kb on + strand, within CSW01_05750at 1202.083 kb on - strand, within CSW01_05750at 1202.083 kb on - strand, within CSW01_05750at 1202.085 kb on + strand, within CSW01_05750at 1202.094 kb on - strandat 1202.155 kb on + strandat 1202.155 kb on + strandat 1202.155 kb on + strandat 1202.155 kb on + strandat 1202.163 kb on - strandat 1202.163 kb on - strandat 1202.163 kb on - strandat 1202.163 kb on - strandat 1202.178 kb on - strandat 1202.186 kb on - strandat 1202.265 kb on - strandat 1202.306 kb on - strandat 1202.365 kb on - strand, within CSW01_05755at 1202.365 kb on - strand, within CSW01_05755at 1202.365 kb on - strand, within CSW01_05755at 1202.389 kb on - strand, within CSW01_05755at 1202.393 kb on + strand, within CSW01_05755at 1202.393 kb on + strand, within CSW01_05755at 1202.472 kb on + strand, within CSW01_05755at 1202.472 kb on - strand, within CSW01_05755at 1202.514 kb on - strand, within CSW01_05755at 1202.516 kb on + strand, within CSW01_05755at 1202.631 kb on + strand, within CSW01_05755at 1202.727 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.848 kb on - strand, within CSW01_05755at 1202.848 kb on - strand, within CSW01_05755at 1202.848 kb on - strand, within CSW01_05755at 1202.862 kb on + strand, within CSW01_05755at 1202.870 kb on - strand, within CSW01_05755at 1202.870 kb on - strand, within CSW01_05755at 1202.893 kb on - strand, within CSW01_05755at 1202.898 kb on - strand, within CSW01_05755at 1202.972 kb on - strand, within CSW01_05755at 1202.980 kb on - strand, within CSW01_05755at 1202.996 kb on + strand, within CSW01_05755at 1203.017 kb on - strand, within CSW01_05755at 1203.055 kb on + strand, within CSW01_05755at 1203.121 kb on + strand, within CSW01_05755at 1203.129 kb on - strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.150 kb on - strand, within CSW01_05755at 1203.263 kb on - strandat 1203.411 kb on - strandat 1203.425 kb on + strand, within CSW01_05760at 1203.427 kb on + strand, within CSW01_05760at 1203.427 kb on + strand, within CSW01_05760at 1203.427 kb on + strand, within CSW01_05760at 1203.432 kb on + strand, within CSW01_05760at 1203.489 kb on + strand, within CSW01_05760at 1203.489 kb on + strand, within CSW01_05760at 1203.497 kb on - strand, within CSW01_05760at 1203.497 kb on - strand, within CSW01_05760at 1203.499 kb on + strand, within CSW01_05760at 1203.541 kb on - strand, within CSW01_05760at 1203.619 kb on - strand, within CSW01_05760at 1203.656 kb on - strand, within CSW01_05760at 1203.688 kb on + strand, within CSW01_05760at 1203.708 kb on + strand, within CSW01_05760at 1203.729 kb on + strand, within CSW01_05760at 1203.753 kb on + strand, within CSW01_05760at 1203.761 kb on - strand, within CSW01_05760at 1203.761 kb on - strand, within CSW01_05760at 1203.761 kb on - strand, within CSW01_05760at 1203.761 kb on - strand, within CSW01_05760at 1203.780 kb on - strand, within CSW01_05760at 1203.817 kb on + strand, within CSW01_05760at 1203.831 kb on - strand, within CSW01_05760at 1203.855 kb on + strand, within CSW01_05760at 1203.866 kb on + strand, within CSW01_05760at 1204.019 kb on - strand, within CSW01_05760at 1204.044 kb on - strand, within CSW01_05760at 1204.044 kb on - strand, within CSW01_05760at 1204.080 kb on - strand, within CSW01_05760at 1204.109 kb on + strand, within CSW01_05760at 1204.111 kb on + strand, within CSW01_05760at 1204.119 kb on - strand, within CSW01_05760at 1204.177 kb on + strand, within CSW01_05760at 1204.203 kb on + strand, within CSW01_05760at 1204.209 kb on + strand, within CSW01_05760at 1204.217 kb on - strand, within CSW01_05760at 1204.260 kb on - strand, within CSW01_05760

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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1,201,301 - CSW01_05750 0.29 -0.3
1,201,388 + CSW01_05750 0.36 +0.7
1,201,388 + CSW01_05750 0.36 -1.2
1,201,396 - CSW01_05750 0.37 -0.4
1,201,396 - CSW01_05750 0.37 +0.2
1,201,426 + CSW01_05750 0.39 +1.2
1,201,444 - CSW01_05750 0.40 +0.1
1,201,460 - CSW01_05750 0.42 +1.3
1,201,460 - CSW01_05750 0.42 -2.4
1,201,490 + CSW01_05750 0.44 -0.2
1,201,490 + CSW01_05750 0.44 +0.9
1,201,498 - CSW01_05750 0.45 -0.7
1,201,626 + CSW01_05750 0.54 +0.8
1,201,634 - CSW01_05750 0.55 +1.0
1,201,682 - CSW01_05750 0.59 -1.7
1,201,700 - CSW01_05750 0.60 -0.7
1,201,745 - CSW01_05750 0.64 +0.3
1,201,775 + CSW01_05750 0.66 +0.5
1,201,852 + CSW01_05750 0.72 +0.1
1,201,882 + CSW01_05750 0.74 +1.2
1,201,951 + CSW01_05750 0.79 +1.4
1,202,063 - CSW01_05750 0.88 +0.2
1,202,075 + CSW01_05750 0.89 +0.6
1,202,083 - CSW01_05750 0.90 +0.2
1,202,083 - CSW01_05750 0.90 -0.6
1,202,085 + CSW01_05750 0.90 +0.7
1,202,094 - +0.7
1,202,155 + +2.5
1,202,155 + +0.1
1,202,155 + -0.3
1,202,155 + +1.6
1,202,163 - +0.5
1,202,163 - +1.2
1,202,163 - +0.1
1,202,163 - +0.4
1,202,178 - +1.3
1,202,186 - -0.2
1,202,265 - +1.4
1,202,306 - -1.2
1,202,365 - CSW01_05755 0.14 +0.6
1,202,365 - CSW01_05755 0.14 -0.2
1,202,365 - CSW01_05755 0.14 +0.3
1,202,389 - CSW01_05755 0.16 -0.7
1,202,393 + CSW01_05755 0.17 -0.4
1,202,393 + CSW01_05755 0.17 -0.3
1,202,472 + CSW01_05755 0.24 -0.9
1,202,472 - CSW01_05755 0.24 +0.7
1,202,514 - CSW01_05755 0.28 +0.8
1,202,516 + CSW01_05755 0.28 -0.5
1,202,631 + CSW01_05755 0.39 +0.6
1,202,727 + CSW01_05755 0.49 -1.2
1,202,840 + CSW01_05755 0.60 +0.6
1,202,840 + CSW01_05755 0.60 +0.5
1,202,840 + CSW01_05755 0.60 -1.0
1,202,840 + CSW01_05755 0.60 +1.3
1,202,840 + CSW01_05755 0.60 +0.5
1,202,840 + CSW01_05755 0.60 +0.3
1,202,840 + CSW01_05755 0.60 -0.4
1,202,848 - CSW01_05755 0.60 -0.3
1,202,848 - CSW01_05755 0.60 -0.3
1,202,848 - CSW01_05755 0.60 +0.1
1,202,862 + CSW01_05755 0.62 +1.2
1,202,870 - CSW01_05755 0.62 +0.8
1,202,870 - CSW01_05755 0.62 -0.9
1,202,893 - CSW01_05755 0.65 -2.2
1,202,898 - CSW01_05755 0.65 +0.1
1,202,972 - CSW01_05755 0.72 +0.7
1,202,980 - CSW01_05755 0.73 -0.9
1,202,996 + CSW01_05755 0.75 +1.0
1,203,017 - CSW01_05755 0.77 +0.1
1,203,055 + CSW01_05755 0.80 +0.5
1,203,121 + CSW01_05755 0.87 +0.3
1,203,129 - CSW01_05755 0.87 +0.3
1,203,131 + CSW01_05755 0.88 -2.4
1,203,131 + CSW01_05755 0.88 +0.3
1,203,131 + CSW01_05755 0.88 +0.4
1,203,131 + CSW01_05755 0.88 -0.2
1,203,131 + CSW01_05755 0.88 -0.1
1,203,131 + CSW01_05755 0.88 -0.1
1,203,131 + CSW01_05755 0.88 +1.3
1,203,131 + CSW01_05755 0.88 +0.0
1,203,131 + CSW01_05755 0.88 -0.3
1,203,131 + CSW01_05755 0.88 +1.7
1,203,131 + CSW01_05755 0.88 +0.6
1,203,131 + CSW01_05755 0.88 -1.3
1,203,131 + CSW01_05755 0.88 +1.2
1,203,131 + CSW01_05755 0.88 -0.2
1,203,131 + CSW01_05755 0.88 -0.4
1,203,131 + CSW01_05755 0.88 -0.3
1,203,131 + CSW01_05755 0.88 +0.2
1,203,131 + CSW01_05755 0.88 +1.1
1,203,131 + CSW01_05755 0.88 -0.9
1,203,131 + CSW01_05755 0.88 -1.1
1,203,131 + CSW01_05755 0.88 +0.4
1,203,131 + CSW01_05755 0.88 +0.5
1,203,131 + CSW01_05755 0.88 -0.5
1,203,131 + CSW01_05755 0.88 +0.3
1,203,131 + CSW01_05755 0.88 +0.4
1,203,131 + CSW01_05755 0.88 +0.9
1,203,139 - CSW01_05755 0.88 -0.3
1,203,139 - CSW01_05755 0.88 +0.1
1,203,139 - CSW01_05755 0.88 +0.1
1,203,139 - CSW01_05755 0.88 -0.4
1,203,139 - CSW01_05755 0.88 -0.2
1,203,139 - CSW01_05755 0.88 -0.4
1,203,139 - CSW01_05755 0.88 -1.4
1,203,139 - CSW01_05755 0.88 +0.2
1,203,139 - CSW01_05755 0.88 +0.8
1,203,139 - CSW01_05755 0.88 -0.5
1,203,139 - CSW01_05755 0.88 +0.9
1,203,139 - CSW01_05755 0.88 -1.2
1,203,139 - CSW01_05755 0.88 -2.4
1,203,139 - CSW01_05755 0.88 -0.1
1,203,139 - CSW01_05755 0.88 +0.3
1,203,139 - CSW01_05755 0.88 -0.7
1,203,139 - CSW01_05755 0.88 +0.0
1,203,139 - CSW01_05755 0.88 -0.6
1,203,139 - CSW01_05755 0.88 +1.1
1,203,139 - CSW01_05755 0.88 +0.2
1,203,139 - CSW01_05755 0.88 -0.5
1,203,150 - CSW01_05755 0.89 -0.2
1,203,263 - -0.3
1,203,411 - -0.8
1,203,425 + CSW01_05760 0.11 +0.2
1,203,427 + CSW01_05760 0.11 +1.2
1,203,427 + CSW01_05760 0.11 +0.6
1,203,427 + CSW01_05760 0.11 +0.1
1,203,432 + CSW01_05760 0.11 -1.1
1,203,489 + CSW01_05760 0.16 +1.1
1,203,489 + CSW01_05760 0.16 +1.1
1,203,497 - CSW01_05760 0.17 +0.7
1,203,497 - CSW01_05760 0.17 +0.2
1,203,499 + CSW01_05760 0.17 +0.2
1,203,541 - CSW01_05760 0.21 -1.2
1,203,619 - CSW01_05760 0.29 +0.0
1,203,656 - CSW01_05760 0.32 +1.7
1,203,688 + CSW01_05760 0.35 +0.1
1,203,708 + CSW01_05760 0.37 +0.3
1,203,729 + CSW01_05760 0.39 +0.7
1,203,753 + CSW01_05760 0.41 +0.2
1,203,761 - CSW01_05760 0.42 -1.4
1,203,761 - CSW01_05760 0.42 +0.6
1,203,761 - CSW01_05760 0.42 -1.4
1,203,761 - CSW01_05760 0.42 -0.5
1,203,780 - CSW01_05760 0.44 +1.0
1,203,817 + CSW01_05760 0.47 +0.4
1,203,831 - CSW01_05760 0.48 +0.2
1,203,855 + CSW01_05760 0.51 +0.5
1,203,866 + CSW01_05760 0.52 +0.2
1,204,019 - CSW01_05760 0.66 +0.7
1,204,044 - CSW01_05760 0.68 -0.3
1,204,044 - CSW01_05760 0.68 -0.3
1,204,080 - CSW01_05760 0.72 +0.0
1,204,109 + CSW01_05760 0.74 +1.2
1,204,111 + CSW01_05760 0.74 +0.5
1,204,119 - CSW01_05760 0.75 +3.2
1,204,177 + CSW01_05760 0.81 +0.7
1,204,203 + CSW01_05760 0.83 -0.2
1,204,209 + CSW01_05760 0.84 -0.7
1,204,217 - CSW01_05760 0.84 -0.1
1,204,260 - CSW01_05760 0.88 +2.7

Or see this region's nucleotide sequence